def add_additional_resource(self, description, location, copy_file=False):
"""
Add any kind of additional resource.
If copy_file is set to False, the location and description will be added as-is.
This is useful e.g. for the case of providing a URL to a web-based resource.
If copy_file is set to True, we will try to copy the file from the location you have given
into the output directory. This only works if the location is a local file.
If the location you gave does not exist or points to a file larger than 100 MB,
a RuntimeError will be raised.
While the file checks are performed immediately (i.e. the file must exist when this
function is called), the actual copying only happens once create_files function of the
submission object is called.
:param description: Description of what the resource is.
:type description: string.
:param location: Can be either a URL pointing to a web-based resource or a local file path.
:type: string
:param copy_file: If set to true, will attempt to copy a local file to the tar ball.
:type copy_file: bool
"""
resource = {}
resource["description"] = description
if copy_file:
helpers.check_file_existence(location)
helpers.check_file_size(location, upper_limit=100)
resource["location"] = os.path.basename(location)
else:
resource["location"] = location
self.additional_resources.append(resource)
self.files_to_copy.append(location)
def copy_files(self, outdir):
"""
Copy the files in the files_to_copy list to the output directory.
:param outdir: Output directory path to copy to.
:type outdir: string
"""
for ifile in self.files_to_copy:
helpers.check_file_existence(ifile)
helpers.check_file_size(ifile, upper_limit=100)
shutil.copy2(ifile, outdir)