def make_flats(cubes, common_cube, conf, temp_token, keep=False):
# If the flat files already exist, don't remake them.
# "$OBS_ID"."_".$ccd."-".$common.".flat.tab"
jitter_cubes = list()
n_row = int(
common_cube.lines
/ conf["AutoRegistration"]["ControlNet"]["Control_Lines"]
)
for c in cubes:
if c == common_cube:
continue
jitter_cubes.append(
hjr.JitterCube(
c.next_path, matchccd=common_cube.get_ccd(), config=conf
)
)
successful_flats = list()
if not all(x.flattab_path.exists() for x in jitter_cubes):
confauto = conf["AutoRegistration"]
for c in jitter_cubes:
params = {
"ROWS": n_row,
"TOLERANCE": confauto["Algorithm"]["Tolerance"],
}
min_fraction_good = confauto["AnaylyzeFlat"]["Minimum_Good"]
if c.ccdname == "RED":
redcolor = "Red"
else:
redcolor = "Color"
params["GROUP"] = "ResolveJitter"
params["COLS"] = confauto["ControlNet"]["Control_Cols_" + redcolor]
params["PATTERN_SAMPLES"] = confauto["PatternChip" + redcolor][
"Samples"
]
params["PATTERN_LINES"] = confauto["PatternChip" + redcolor][
"Lines"
]
params["SEARCH_SAMPLES"] = confauto["SearchChip" + redcolor][
"Samples"
]
params["SEARCH_LINES"] = confauto["SearchChip" + redcolor]["Lines"]
if c.ccdname != "RED":
channels = isis.getkey_k(
c.path, "Instrument", "StitchedProductIds"
)
if len(channels) < 2:
logger.info(
f"Increasing columns because {c.path} is "
"missing a channel."
)
params["COLS"] += 1
min_fraction_good *= 0.5
logger.info(
"The minimum allowable Fraction Good "
f"Matches = {min_fraction_good}"
)
step = 0
while step <= confauto["Algorithm"]["Steps"]:
logger.info(f"Step {step} begin")
hjr.run_HiJitReg(
common_cube.next_path, c, params, temp_token, keep=keep
)
ret = hjr.Analyze_Flat(
c, 0, (min_fraction_good * 2), hijitreg=False
)
if ret == 1:
successful_flats.append(c.flattab_path)
break
else:
step += 1
c.regdef_path.unlink()
c.flattab_path.unlink()
c.cnet_path.unlink()
params["TOLERANCE"] -= (
confauto["Algorithm"]["Increment"] * step
)
else:
raise RuntimeError(
f"Flat file for {c} is not within tolerances."
)
else:
successful_flats = list(x.flattab_path for x in jitter_cubes)
return successful_flats
def test_run_HiJitReg(self, m_Path, m_hijitreg, m_cnetbin2pvl):
hjr.run_HiJitReg(self.r.path, self.j, jitter_params, "foo", keep=True)
m_hijitreg.assert_called_once()
m_cnetbin2pvl.assert_called_once()