def main():
processor = SGEArrayProcessor(raise_errors=True,
modulus=1000,
task_pickle=opts[TASK_PICKLE])
processor.make_tasks(_tasks)
for r in processor.run(protein, result=upload):
pass
def main():
# Override for single experiment
if opts[EXPERIMENT]:
id = _tasks()[0]
return organism(id)
pool = SGEArrayProcessor("/home/patrick/gi_list.tasks")
pool.make_tasks(_tasks)
for r in pool.run(organism):
pass
def main():
processor = SGEArrayProcessor(raise_errors=True, modulus=1000,task_pickle=opts[TASK_PICKLE])
processor.make_tasks(_tasks)
for r in processor.run(protein,result=upload):
pass
def main(fasta_file):
opts[FASTA] = fasta_file
pool = SGEArrayProcessor(task_pickle="/home/patrick/import_nr.tasks")
pool.make_tasks(lambda: None)
for r in pool.run(process):
pass
def main(fasta_file):
pool = SGEArrayProcessor()
pool.make_tasks(lambda: None)
for r in pool.run(process):
pass
