def available_statistics_info():
"""
get all available statistics info
"""
info = []
for statistic_ident in [CORE_STATISTICS, ASYMMETRY_STATISTICS,
CHECK_STATISTICS]:
info.append(statistic_ident + ': ' +
commas(get_statistics_names(statistic_ident)))
info.append(ALL_STATISTICS + ': all above statistics')
info.append(NON_CHECK_STATISTICS + ': ' + CORE_STATISTICS + ', '
+ ASYMMETRY_STATISTICS)
def available_statistics_info():
"""
get all available statistics info
"""
info = []
for statistic_ident in [
CORE_STATISTICS, ASYMMETRY_STATISTICS, CHECK_STATISTICS
]:
info.append(statistic_ident + ': ' +
commas(get_statistics_names(statistic_ident)))
info.append(ALL_STATISTICS + ': all above statistics')
info.append(NON_CHECK_STATISTICS + ': ' + CORE_STATISTICS + ', ' +
ASYMMETRY_STATISTICS)
def getSeparatorLabels():
"""
to get default separator label names
"""
return commas(Separator.getSeparatorsLabels())
def getParser(self):
"""
parse program's parameters, the information is stored in
poincare plot parameters object
"""
to_bool = lambda p: True if p.title() == "True" else False
parser = argparse.ArgumentParser(
'Program to generate Poincare Plot statistics:') # @IgnorePep8
common_group = parser.add_argument_group(
title=COMMON_PARAMETERS_GROUP, description="Common parameters")
common_group.add_argument(
"-interactive",
"--interactive",
help="interactive mode (not implemented yet)",
type=to_bool,
default=False)
common_group.add_argument(
"-data_dir",
"--data_dir",
help="directory where input data files are located",
default=os.getcwd())
common_group.add_argument(
"-extension",
"--extension",
default="*",
help="extension of data input files in the form <*.ext>")
common_group.add_argument(
"-data_file",
"--data_file",
help="alternative option to set one data source file")
common_group.add_argument(
"-window_size",
"--window_size",
help=
"""data window size expressed in number of data items or in time units by suffix: s - second, m - minute, h - hour, examples: 100, 5m"""
) # @IgnorePep8
common_group.add_argument(
"-ws",
"--window_shift",
type=int,
help="window data shift between two sets of signals",
default=1)
common_group.add_argument("-output_dir",
"--output_dir",
help="directory for outcomes files",
default=DEFAULT_OUTCOME_DIRECTORY)
common_group.add_argument("-he",
"--headers",
type=to_bool,
help="display lines of headers",
default=False)
common_group.add_argument(
"-signal_index",
"--signal_index",
type=int,
help="index of a signal column in a data source file (0 based)",
default=-1)
common_group.add_argument(
"-annotation_index",
"--annotation_index",
help=
"""index of an annotation column in a data source file (0 based)""", # @IgnorePep8
default=-1,
type=int)
common_group.add_argument(
"-time_index",
"--time_index",
type=int,
help="index of a time column in a data source file (0 based)",
default=-1)
common_group.add_argument(
"-signal_label",
"--signal_label",
help="name of a signal header in input data [optional]")
common_group.add_argument(
"-annotation_label",
"--annotation_label",
help="name of a annotation header in input data [optional]")
common_group.add_argument(
"-time_label",
"--time_label",
help="name of a time header in input data [optional]")
common_group.add_argument(
"-time_format",
"--time_format",
help=
"""time format, for example, for '08:21:44.020' use %H:%M:%S.%f"""
) # @IgnorePep8
common_group.add_argument(
"-headers_count",
"--headers_count",
help=
"""number of headers lines in data source (program tries to determine this values on it's own)""", # @IgnorePep8
type=int,
default=0)
common_group.add_argument(
"-separator",
"--separator",
help="a separator used between columns, one from the set: " +
getSeparatorLabels() +
", <custom>; note: the application tries to discover a separator on its own"
) # @IgnorePep8
common_group.add_argument(
"-dav",
"--display_annotation_values",
help=
"""display unique annotations values presented in data source files""", # @IgnorePep8
type=to_bool,
default=False)
common_group.add_argument(
"-filters_names",
"--filters_names",
help="""use filters; available filters: """ +
commas(get_filters_short_names())) # @IgnorePep8
common_group.add_argument(
"-ea",
"--excluded_annotations",
help=
"""specifies which values (separated by a comma) have to be interpreted as true annotations values; if not specified then all non-0 values in a annotation column are such entities"""
) # @IgnorePep8
common_group.add_argument(
"-ordinal",
"--ordinal_column_name",
help=
"""name of the ordinal column, index or time it depends on window size unit, which will be the first column in outcomes"""
) # @IgnorePep8
common_group.add_argument("-use_identity_line",
"--use_identity_line",
help="during calculations use identity line",
type=to_bool,
default=True)
common_group.add_argument(
"-use_buffer",
"--use_buffer",
help="use buffer during statistics calculations",
type=to_bool,
default=True)
common_group.add_argument(
"-override_existing_outcomes",
"--override_existing_outcomes", # @IgnorePep8
help="override existing outcomes",
type=to_bool,
default=False)
common_group.add_argument(
"-sample_step",
"--sample_step",
help=
"""how big have to be a step for window resampling size; it is assumed that this quantity is expressed in signal unit value 0 means no use of window resampling size at all [optional]""", # @IgnorePep8
type=int)
common_group.add_argument(
"-stepper",
"--stepper",
help=
"""to define amount by which data window have to jump during process of data expressed in number of data items or in time units by suffix: s - second, m - minute, h - hour; examples: 100, 5m [optional]"""
) # @IgnorePep8
common_group.add_argument(
"-output_prefix",
"--output_prefix",
help="""a label included in a name of an output file [optional]""")
common_group.add_argument(
"-save_parameters",
"--save_parameters",
help="""save parameters of poincare plot generation""",
type=to_bool,
default=True)
common_group.add_argument(
"-progress_mark",
"--progress_mark",
help="""show progress bar during generation of statistics""",
type=to_bool,
default=True)
common_group.add_argument("-print_first_signal",
"--print_first_signal",
help="""print the first row of a signal""",
type=to_bool,
default=True)
common_group.add_argument("-shuffle_data",
"--shuffle_data",
help="""shuffle data""",
type=to_bool,
default=False)
statistics_group = parser.add_argument_group(
title=STATISTICS_PARAMETERS_GROUP,
description="Statistics parameters")
statistics_group.add_argument("-out_prec",
"--output_precision",
help="precision for output data",
default="10,5")
statistics_group.add_argument(
"-statistics_names",
"--statistics_names", # @IgnorePep8
help="list of statistics names to calculate, available: " +
commas(get_statistics_names(ALL_STATISTICS))) # @IgnorePep8
statistics_group.add_argument(
"-summary_statistics_names",
"--summary_statistics_names", # @IgnorePep8
help="list of summary statistics names to calculate, available: " +
commas(get_summary_statistics_names(ALL_SUMMARY_STATISTICS))
) # @IgnorePep8
statistics_group.add_argument(
"-output_separator",
"--output_separator", # @IgnorePep8
help="a separator for output data",
default=",")
statistics_group.add_argument("-add_headers",
"--add_headers",
help="headers in the output files",
type=to_bool,
default=True)
statistics_group.add_argument(
"-group_data_filename",
"--group_data_filename", # @IgnorePep8
help=
"""used as a file where are stored all input files according to data_dir and extension and this overall file is used as a input file for further analisys [optional]"""
) # @IgnorePep8
statistics_group.add_argument(
"-headers_aliases",
"--headers_aliases",
help=
"""aliases for output headers, this parameter must correspond to items of statistics_names"""
) # @IgnorePep8
statistics_group.add_argument(
"-summary_headers_aliases",
"--summary_headers_aliases", # @IgnorePep8
help=
"""aliases for output summary headers, this parameter must correspond to items of summary_statistics_names"""
) # @IgnorePep8
statistics_group.add_argument(
"-dynamic_plots_headers",
"--dynamic_plots_headers", # @IgnorePep8
help=
"""draw many plots base on data from _source_file and collection of headers grouped by a semicolon, elements in a group are separated by a comma"""
) # @IgnorePep8
statistics_group.add_argument("-timing",
"--timing",
help="add timing column",
type=to_bool,
default=False)
movie_group = parser.add_argument_group(title=MOVIE_PARAMETERS_GROUP,
description="Movie parameters")
movie_group.add_argument(
"-movie_name",
"--movie_name",
help="""name of a movie for Poincare plot evolutions""")
movie_group.add_argument(
"-movie_dir",
"--movie_dir",
help=
"""directory for movie files, if is not present assumed output_dir"""
) # @IgnorePep8
movie_group.add_argument(
"-movie_multiprocessing_factor",
"--movie_multiprocessing_factor", # @IgnorePep8
help=
"""to generate a poincare plot movie use multiprocessing, active on multiprocessing hardware, greater value > 0 give use a few processors""", # @IgnorePep8
type=int)
movie_group.add_argument("-movie_bin_size",
"--movie_bin_size",
help="""movie bin size """,
type=int,
default=500)
movie_group.add_argument("-movie_fps",
"--movie_fps",
help="""a movie fps [optional]""",
type=int,
default=700)
movie_group.add_argument("-movie_save_partial",
"--movie_save_partial",
help="""save partial generated movie""",
type=to_bool,
default=True)
movie_group.add_argument(
"-movie_not_save",
"--movie_not_save",
help="""not save a movie, used to save only frames""",
type=to_bool,
default=False)
movie_group.add_argument(
"-movie_skip_to_frame",
"--movie_skip_to_frame", # @IgnorePep8
help="""skip to a movie frame [optional]""",
type=int,
default=0)
movie_group.add_argument(
"-movie_experimental_code",
"--movie_experimental_code", # @IgnorePep8
help="""use some movie experimental code only for tests""",
type=to_bool,
default=False)
movie_group.add_argument(
"-movie_animated",
"--movie_animated",
help=
"""use animation API to generate a movie; required mencoder and ffmpeg""", # @IgnorePep8
type=to_bool,
default=False)
movie_group.add_argument(
"-movie_calculate_all_frames",
"--movie_calculate_all_frames", # @IgnorePep8
help="""before generation png files all frames are calculated""",
type=to_bool,
default=True)
movie_group.add_argument(
"-movie_standard_generation",
"--movie_standard_generation", # @IgnorePep8
help=
"""standard generation of movie by use of matplotlib plotting library [could be very slow for huge recordings (e.g. 24h)]""", # @IgnorePep8
type=to_bool,
default=False)
movie_group.add_argument("-movie_dpi",
"--movie_dpi",
help="""movie dpi""",
default=70,
type=int)
movie_group.add_argument("-movie_width",
"--movie_width",
help="""movie width""",
default=550,
type=int)
movie_group.add_argument("-movie_height",
"--movie_height",
help="""movie height""",
default=550,
type=int)
movie_group.add_argument("-movie_active_size",
"--movie_active_size",
help="""movie active plot data point size""",
default=3,
type=int)
movie_group.add_argument(
"-movie_inactive_size",
"--movie_inactive_size", # @IgnorePep8
help="""movie inactive plot data point size""",
default=3,
type=int)
movie_group.add_argument(
"-movie_centroid_size",
"--movie_centroid_size", # @IgnorePep8
help="""movie centroid plot data point size""",
default=6,
type=int)
movie_group.add_argument(
"-movie_prefixed_by_source",
"--movie_prefixed_by_source", # @IgnorePep8
help=
"""all intermediate frame files and output movie filename is prefixed by a name of a source file (minus extension)""", # @IgnorePep8
type=to_bool,
default=True)
movie_group.add_argument(
"-movie_clean_frames",
"--movie_clean_frames",
help="""after movie creation all frame files are deleted""",
type=to_bool,
default=True)
movie_group.add_argument(
"-x_label",
"--x_label",
help="""label of X axis of poincare plot [optional]""")
movie_group.add_argument(
"-y_label",
"--y_label",
help="""label of Y axis of poincare plot [optional]""")
movie_group.add_argument("-movie_title",
"--movie_title",
help="""movie title [optional]""")
movie_group.add_argument(
"-movie_frame_step",
"--movie_frame_step",
help="""only every movie step a frame is generated""",
default=-1,
type=int)
movie_group.add_argument(
"-movie_identity_line",
"--movie_identity_line",
help="""draw identity line in Poincare plot """,
type=to_bool,
default=False)
movie_group.add_argument(
"-movie_hour_label",
"--movie_hour_label",
help="""label of hour in a Poincare plot [optional]""")
movie_group.add_argument(
"-movie_minute_label",
"--movie_minute_label",
help="""label of minute in a Poincare plot [optional]""")
movie_group.add_argument(
"-movie_second_label",
"--movie_second_label",
help="""label of second in a Poincare plot [optional]""")
movie_group.add_argument(
"-movie_time_label_in_line",
"--movie_time_label_in_line",
help=
"""draw time label (hour, minute, second) in one line at a Poincare plot [optional]""",
type=to_bool,
default=False)
movie_group.add_argument(
"-movie_time_label_font_size",
"--movie_time_label_font_size",
help="""movie time label font size [optional]""",
default=-1,
type=int)
movie_group.add_argument("-movie_time_label_prefix",
"--movie_time_label_prefix",
help="""movie time label prefix [optional]""",
default=None)
movie_group.add_argument("-movie_title_font_size",
"--movie_title_font_size",
help="""movie title font size [optional]""",
default=-1,
type=int)
movie_group.add_argument("-movie_axis_font_size",
"--movie_axis_font_size",
help="""movie axis font size [optional]""",
default=-1,
type=int)
movie_group.add_argument(
"-movie_axis_font",
"--movie_axis_font",
help="""movie axis font, example: '15 pt bold italic' [optional]""",
default=None)
movie_group.add_argument(
"-movie_title_font",
"--movie_title_font",
help=
"""movie title font, example: '15 pt bold italic' [optional]""",
default=None)
movie_group.add_argument(
"-movie_tick_font",
"--movie_tick_font",
help="""movie tick font, example: '15 pt bold italic' [optional]""",
default=None)
movie_group.add_argument(
"-movie_frame_pad",
"--movie_frame_pad",
help=
"""movie frame pad, the space used for axes and ticks labels [optional]""",
default=-1,
type=int)
movie_group.add_argument(
"-movie_create_time_label",
"--movie_create_time_label",
help="""does it create time label ? (default=True)[optional]""",
type=to_bool,
default=True)
movie_group.add_argument(
"-movie_frame_filename_with_time",
"--movie_frame_filename_with_time",
help=
"""movie frame filename includes timestamp (default=False)[optional]""",
type=to_bool,
default=False)
#add information about parameters
for group in parser._action_groups:
if not group.description == None:
for action in group._group_actions:
self.__p__.addParameterInfo(
group=group.title,
name=action.dest,
default=action.default,
_help=action.help,
group_description=group.description)
return parser
name=action.dest,
default=action.default,
_help=action.help,
group_description=group.description)
return parser
if __name__ == '__main__':
ppManager = PoincarePlotManager()
__args = ppManager.getParser().parse_args()
#copy all parameters from __args object into ppManager object
copy_object(__args, ppManager)
ppManager.movie_dir = nvl(__args.movie_dir, ppManager.output_dir)
_disp = False
if __args.display_annotation_values == True:
_disp = True
print('Annotations: ' +
commas(ppManager.getUniqueAnnotations(), _default='none'))
if __args.headers == True:
_disp = True
print('Headers:')
for header in ppManager.getHeaders():
print(header)
if _disp == False:
if ppManager.movie_name == None:
ppManager.generate()
else:
ppManager.generate_movie()
def getSeparatorLabels():
"""
to get default separator label names
"""
return commas(Separator.getSeparatorsLabels())
def getParser(self):
"""
parse program's parameters, the information is stored in
poincare plot parameters object
"""
to_bool = lambda p: True if p.title() == "True" else False
parser = argparse.ArgumentParser('Program to generate Poincare Plot statistics:') # @IgnorePep8
common_group = parser.add_argument_group(
title=COMMON_PARAMETERS_GROUP,
description="Common parameters")
common_group.add_argument("-interactive", "--interactive",
help="interactive mode (not implemented yet)", type=to_bool,
default=False)
common_group.add_argument("-data_dir", "--data_dir",
help="directory where input data files are located",
default=os.getcwd())
common_group.add_argument("-extension", "--extension", default="*",
help="extension of data input files in the form <*.ext>")
common_group.add_argument("-data_file", "--data_file",
help="alternative option to set one data source file")
common_group.add_argument("-window_size", "--window_size",
help="""data window size expressed in number of data items or in time units by suffix: s - second, m - minute, h - hour, examples: 100, 5m""") # @IgnorePep8
common_group.add_argument("-ws", "--window_shift", type=int,
help="window data shift between two sets of signals",
default=1)
common_group.add_argument("-output_dir", "--output_dir",
help="directory for outcomes files",
default=DEFAULT_OUTCOME_DIRECTORY)
common_group.add_argument("-he", "--headers", type=to_bool,
help="display lines of headers",
default=False)
common_group.add_argument("-signal_index", "--signal_index", type=int,
help="index of a signal column in a data source file (0 based)",
default=-1)
common_group.add_argument("-annotation_index", "--annotation_index",
help="""index of an annotation column in a data source file (0 based)""", # @IgnorePep8
default=-1, type=int)
common_group.add_argument("-time_index", "--time_index", type=int,
help="index of a time column in a data source file (0 based)",
default=-1)
common_group.add_argument("-signal_label", "--signal_label",
help="name of a signal header in input data [optional]")
common_group.add_argument("-annotation_label", "--annotation_label",
help="name of a annotation header in input data [optional]")
common_group.add_argument("-time_label", "--time_label",
help="name of a time header in input data [optional]")
common_group.add_argument("-time_format", "--time_format",
help="""time format, for example, for '08:21:44.020' use %H:%M:%S.%f""") # @IgnorePep8
common_group.add_argument("-headers_count", "--headers_count",
help="""number of headers lines in data source (program tries to determine this values on it's own)""", # @IgnorePep8
type=int, default=0)
common_group.add_argument("-separator", "--separator",
help="a separator used between columns, one from the set: " + getSeparatorLabels() + ", <custom>; note: the application tries to discover a separator on its own") # @IgnorePep8
common_group.add_argument("-dav", "--display_annotation_values",
help="""display unique annotations values presented in data source files""", # @IgnorePep8
type=to_bool, default=False)
common_group.add_argument("-filters_names", "--filters_names",
help="""use filters; available filters: """ + commas(get_filters_short_names())) # @IgnorePep8
common_group.add_argument("-ea", "--excluded_annotations",
help="""specifies which values (separated by a comma) have to be interpreted as true annotations values; if not specified then all non-0 values in a annotation column are such entities""") # @IgnorePep8
common_group.add_argument("-ordinal", "--ordinal_column_name",
help="""name of the ordinal column, index or time it depends on window size unit, which will be the first column in outcomes""") # @IgnorePep8
common_group.add_argument("-use_identity_line", "--use_identity_line",
help="during calculations use identity line",
type=to_bool, default=True)
common_group.add_argument("-use_buffer", "--use_buffer",
help="use buffer during statistics calculations",
type=to_bool, default=True)
common_group.add_argument("-override_existing_outcomes", "--override_existing_outcomes", # @IgnorePep8
help="override existing outcomes",
type=to_bool, default=False)
common_group.add_argument("-sample_step", "--sample_step",
help="""how big have to be a step for window resampling size; it is assumed that this quantity is expressed in signal unit value 0 means no use of window resampling size at all [optional]""", # @IgnorePep8
type=int)
common_group.add_argument("-stepper", "--stepper",
help="""to define amount by which data window have to jump during process of data expressed in number of data items or in time units by suffix: s - second, m - minute, h - hour; examples: 100, 5m [optional]""") # @IgnorePep8
common_group.add_argument("-output_prefix", "--output_prefix",
help="""a label included in a name of an output file [optional]""")
common_group.add_argument("-save_parameters", "--save_parameters",
help="""save parameters of poincare plot generation""",
type=to_bool, default=True)
common_group.add_argument("-progress_mark", "--progress_mark",
help="""show progress bar during generation of statistics""",
type=to_bool, default=True)
common_group.add_argument("-print_first_signal", "--print_first_signal",
help="""print the first row of a signal""",
type=to_bool, default=True)
common_group.add_argument("-shuffle_data", "--shuffle_data",
help="""shuffle data""",
type=to_bool, default=False)
statistics_group = parser.add_argument_group(
title=STATISTICS_PARAMETERS_GROUP,
description="Statistics parameters")
statistics_group.add_argument("-out_prec", "--output_precision",
help="precision for output data",
default="10,5")
statistics_group.add_argument("-statistics_names", "--statistics_names", # @IgnorePep8
help="list of statistics names to calculate, available: " + commas(get_statistics_names(ALL_STATISTICS))) # @IgnorePep8
statistics_group.add_argument("-summary_statistics_names", "--summary_statistics_names", # @IgnorePep8
help="list of summary statistics names to calculate, available: " + commas(get_summary_statistics_names(ALL_SUMMARY_STATISTICS))) # @IgnorePep8
statistics_group.add_argument("-output_separator", "--output_separator", # @IgnorePep8
help="a separator for output data",
default=",")
statistics_group.add_argument("-add_headers", "--add_headers",
help="headers in the output files",
type=to_bool, default=True)
statistics_group.add_argument("-group_data_filename", "--group_data_filename", # @IgnorePep8
help="""used as a file where are stored all input files according to data_dir and extension and this overall file is used as a input file for further analisys [optional]""") # @IgnorePep8
statistics_group.add_argument("-headers_aliases", "--headers_aliases",
help="""aliases for output headers, this parameter must correspond to items of statistics_names""") # @IgnorePep8
statistics_group.add_argument("-summary_headers_aliases", "--summary_headers_aliases", # @IgnorePep8
help="""aliases for output summary headers, this parameter must correspond to items of summary_statistics_names""") # @IgnorePep8
statistics_group.add_argument("-dynamic_plots_headers", "--dynamic_plots_headers", # @IgnorePep8
help="""draw many plots base on data from _source_file and collection of headers grouped by a semicolon, elements in a group are separated by a comma""") # @IgnorePep8
statistics_group.add_argument("-timing", "--timing",
help="add timing column",
type=to_bool, default=False)
movie_group = parser.add_argument_group(
title=MOVIE_PARAMETERS_GROUP,
description="Movie parameters")
movie_group.add_argument("-movie_name", "--movie_name",
help="""name of a movie for Poincare plot evolutions""")
movie_group.add_argument("-movie_dir", "--movie_dir",
help="""directory for movie files, if is not present assumed output_dir""") # @IgnorePep8
movie_group.add_argument("-movie_multiprocessing_factor", "--movie_multiprocessing_factor", # @IgnorePep8
help="""to generate a poincare plot movie use multiprocessing, active on multiprocessing hardware, greater value > 0 give use a few processors""", # @IgnorePep8
type=int)
movie_group.add_argument("-movie_bin_size", "--movie_bin_size",
help="""movie bin size """, type=int, default=500)
movie_group.add_argument("-movie_fps", "--movie_fps",
help="""a movie fps [optional]""", type=int, default=700)
movie_group.add_argument("-movie_save_partial", "--movie_save_partial",
help="""save partial generated movie""",
type=to_bool, default=True)
movie_group.add_argument("-movie_not_save", "--movie_not_save",
help="""not save a movie, used to save only frames""",
type=to_bool, default=False)
movie_group.add_argument("-movie_skip_to_frame", "--movie_skip_to_frame", # @IgnorePep8
help="""skip to a movie frame [optional]""", type=int, default=0)
movie_group.add_argument("-movie_experimental_code", "--movie_experimental_code", # @IgnorePep8
help="""use some movie experimental code only for tests""",
type=to_bool, default=False)
movie_group.add_argument("-movie_animated", "--movie_animated",
help="""use animation API to generate a movie; required mencoder and ffmpeg""", # @IgnorePep8
type=to_bool, default=False)
movie_group.add_argument("-movie_calculate_all_frames", "--movie_calculate_all_frames", # @IgnorePep8
help="""before generation png files all frames are calculated""",
type=to_bool, default=True)
movie_group.add_argument("-movie_standard_generation", "--movie_standard_generation", # @IgnorePep8
help="""standard generation of movie by use of matplotlib plotting library [could be very slow for huge recordings (e.g. 24h)]""", # @IgnorePep8
type=to_bool, default=False)
movie_group.add_argument("-movie_dpi", "--movie_dpi",
help="""movie dpi""", default=70, type=int)
movie_group.add_argument("-movie_width", "--movie_width",
help="""movie width""",
default=550, type=int)
movie_group.add_argument("-movie_height", "--movie_height",
help="""movie height""",
default=550, type=int)
movie_group.add_argument("-movie_active_size", "--movie_active_size",
help="""movie active plot data point size""",
default=3, type=int)
movie_group.add_argument("-movie_inactive_size", "--movie_inactive_size", # @IgnorePep8
help="""movie inactive plot data point size""",
default=3, type=int)
movie_group.add_argument("-movie_centroid_size", "--movie_centroid_size", # @IgnorePep8
help="""movie centroid plot data point size""",
default=6, type=int)
movie_group.add_argument("-movie_prefixed_by_source", "--movie_prefixed_by_source", # @IgnorePep8
help="""all intermediate frame files and output movie filename is prefixed by a name of a source file (minus extension)""", # @IgnorePep8
type=to_bool, default=True)
movie_group.add_argument("-movie_clean_frames", "--movie_clean_frames",
help="""after movie creation all frame files are deleted""",
type=to_bool, default=True)
movie_group.add_argument("-x_label", "--x_label",
help="""label of X axis of poincare plot [optional]""")
movie_group.add_argument("-y_label", "--y_label",
help="""label of Y axis of poincare plot [optional]""")
movie_group.add_argument("-movie_title", "--movie_title",
help="""movie title [optional]""")
movie_group.add_argument("-movie_frame_step", "--movie_frame_step",
help="""only every movie step a frame is generated""",
default=-1, type=int)
movie_group.add_argument("-movie_identity_line", "--movie_identity_line",
help="""draw identity line in Poincare plot """,
type=to_bool, default=False)
movie_group.add_argument("-movie_hour_label", "--movie_hour_label",
help="""label of hour in a Poincare plot [optional]""")
movie_group.add_argument("-movie_minute_label", "--movie_minute_label",
help="""label of minute in a Poincare plot [optional]""")
movie_group.add_argument("-movie_second_label", "--movie_second_label",
help="""label of second in a Poincare plot [optional]""")
movie_group.add_argument("-movie_time_label_in_line", "--movie_time_label_in_line",
help="""draw time label (hour, minute, second) in one line at a Poincare plot [optional]""",
type=to_bool, default=False)
movie_group.add_argument("-movie_time_label_font_size", "--movie_time_label_font_size",
help="""movie time label font size [optional]""",
default=-1, type=int)
movie_group.add_argument("-movie_time_label_prefix", "--movie_time_label_prefix",
help="""movie time label prefix [optional]""",
default=None)
movie_group.add_argument("-movie_title_font_size", "--movie_title_font_size",
help="""movie title font size [optional]""",
default=-1, type=int)
movie_group.add_argument("-movie_axis_font_size", "--movie_axis_font_size",
help="""movie axis font size [optional]""",
default=-1, type=int)
movie_group.add_argument("-movie_axis_font", "--movie_axis_font",
help="""movie axis font, example: '15 pt bold italic' [optional]""",
default=None)
movie_group.add_argument("-movie_title_font", "--movie_title_font",
help="""movie title font, example: '15 pt bold italic' [optional]""",
default=None)
movie_group.add_argument("-movie_tick_font", "--movie_tick_font",
help="""movie tick font, example: '15 pt bold italic' [optional]""",
default=None)
movie_group.add_argument("-movie_frame_pad", "--movie_frame_pad",
help="""movie frame pad, the space used for axes and ticks labels [optional]""",
default=-1, type=int)
movie_group.add_argument("-movie_create_time_label", "--movie_create_time_label",
help="""does it create time label ? (default=True)[optional]""",
type=to_bool, default=True)
movie_group.add_argument("-movie_frame_filename_with_time", "--movie_frame_filename_with_time",
help="""movie frame filename includes timestamp (default=False)[optional]""",
type=to_bool, default=False)
#add information about parameters
for group in parser._action_groups:
if not group.description == None:
for action in group._group_actions:
self.__p__.addParameterInfo(
group=group.title,
name=action.dest,
default=action.default,
_help=action.help,
group_description=group.description)
return parser
name=action.dest,
default=action.default,
_help=action.help,
group_description=group.description)
return parser
if __name__ == '__main__':
ppManager = PoincarePlotManager()
__args = ppManager.getParser().parse_args()
#copy all parameters from __args object into ppManager object
copy_object(__args, ppManager)
ppManager.movie_dir = nvl(__args.movie_dir, ppManager.output_dir)
_disp = False
if __args.display_annotation_values == True:
_disp = True
print('Annotations: ' + commas(ppManager.getUniqueAnnotations(),
_default='none'))
if __args.headers == True:
_disp = True
print('Headers:')
for header in ppManager.getHeaders():
print(header)
if _disp == False:
if ppManager.movie_name == None:
ppManager.generate()
else:
ppManager.generate_movie()
