Python read_csv Examples

Example #1

File: plate_layout_io_test.py Project: elkeschaper/hts

def test_read_plate_layout_muscle_miRNA(path):
    test_plate_layout = plate_layout_io.read_csv(os.path.join(path, TEST_LAYOUT_muscle_miRNA))
    assert test_plate_layout == TEST_LAYOUT_MUSCLE

    test_plate_layout = plate_layout_io.read_csv(os.path.join(path, TEST_LAYOUT_muscle_miRNA_medium))
    assert test_plate_layout == TEST_LAYOUT_MUSCLE_MEDIUM

    test_plate_layout = plate_layout_io.read_csv(os.path.join(path, TEST_LAYOUT_muscle_miRNA_mock))

Example #2

File: plate_layout_io_test.py Project: zeromtmu/hts

def test_read_plate_layout_muscle_miRNA(path):
    test_plate_layout = plate_layout_io.read_csv(
        os.path.join(path, TEST_LAYOUT_muscle_miRNA))
    assert test_plate_layout == TEST_LAYOUT_MUSCLE

    test_plate_layout = plate_layout_io.read_csv(
        os.path.join(path, TEST_LAYOUT_muscle_miRNA_medium))
    assert test_plate_layout == TEST_LAYOUT_MUSCLE_MEDIUM

    test_plate_layout = plate_layout_io.read_csv(
        os.path.join(path, TEST_LAYOUT_muscle_miRNA_mock))

Example #3

File: plate_layout.py Project: zeromtmu/hts

    def create(path, format=None):
        """ Create ``PlateLayout`` instance.

        Create ``PlateLayout`` instance.

        Args:
            path (str): Path to input file or directory
            format (str):  Format of the input file, at current not specified


        .. todo:: Write checks for ``format`` and ``path``.
        """

        if format == 'csv':
            layout = plate_layout_io.read_csv(path)
            path, file = os.path.split(path)
            return PlateLayout(name=file, layout=layout)
        elif format == 'pickle':
            with open(file, 'rb') as fh:
                return pickle.load(fh)
        else:
            raise Exception("Format: {} is not implemented in "
                            "PlateLayout.create()".format(format))

Example #4

File: plate_layout.py Project: elkeschaper/hts

    def create(path, format=None):
        """ Create ``PlateLayout`` instance.

        Create ``PlateLayout`` instance.

        Args:
            path (str): Path to input file or directory
            format (str):  Format of the input file, at current not specified


        .. todo:: Write checks for ``format`` and ``path``.
        """

        if format == 'csv':
            layout = plate_layout_io.read_csv(path)
            path, file = os.path.split(path)
            return PlateLayout(name=file, layout=layout)
        elif format == 'pickle':
            with open(file, 'rb') as fh:
                return pickle.load(fh)
        else:
            raise Exception("Format: {} is not implemented in "
                            "PlateLayout.create()".format(format))

Example #5

File: plate_layout_io_test.py Project: zeromtmu/hts

def test_read_plate_layout_insulin(path):
    test_plate_layout = plate_layout_io.read_csv(
        os.path.join(path, TEST_LAYOUT_insulin))

Example #6

File: plate_layout_io_test.py Project: elkeschaper/hts

def test_read_plate_layout_insulin(path):
    test_plate_layout = plate_layout_io.read_csv(os.path.join(path, TEST_LAYOUT_insulin))