class Annotation(orm.EmbeddedDocument):
"""
metabolite name with its 2 scores
"""
annotation = field.Char()
score1 = field.Float()
score2 = field.Float()
class Human(orm.Document):
_db = "test"
_collection = "humans"
human_id = field.AutoIncrement(collection="human")
name = field.Char(required=True, min=2, max=25)
age = field.Integer(required=True, min=0, max=3000)
height = field.Float(min=1, max=100000)
weight = field.Float(min=1, max=30000)
jobs = orm.List(type=Job)
genitalia = field.Char()
location = Location()
car = field.ModelChoice(type=Car)
color = field.Choice(choices=[{
'value': 'red',
'display': 'Red'
}, {
'value': 'blue',
'display': 'Blue'
}, {
'value': 'green',
'display': 'Green'
}])
state = field.CollectionChoice(db='test',
collection='states',
sort=[('fullname', 1)])
email = field.Email()
class Human(orm.Document):
_db = "test"
_collection = "humans"
name = field.Char(required=True, min=2, max=25)
age = field.Integer(min=0, max=3000)
height = field.Float(min=1, max=100000)
weight = field.Float(min=1, max=30000)
jobs = orm.List(type=Job)
genitalia = field.Char()
class Feature(orm.Document):
"""
Feature class
"""
_db = "os_mongo"
_collection = "features"
feature_id = field.AutoIncrement(collection="experiment")
experiment_id = field.Integer(required=True)
mass = field.Float(required=True)
rt = field.Float(required=True)
abundances = orm.List(type=Abundance)
main_attribution = field.Char()
annotations = orm.List(type=Annotation)
class Human(orm.Document):
_db = "test"
_collection = "humans"
_indexes = [
orm.Index("name", key=[("name", orm.Index.DESCENDING)]),
orm.Index("human_id", key=[("human_id", orm.Index.ASCENDING)]),
orm.Index("geo_location", key=[("jobs.locations.geo", orm.Index.GEO2D)])
]
human_id = field.AutoIncrement(collection="human")
name = field.Char(required=True, min=2, max=25)
age = field.Integer(min=0, max=3000)
height = field.Float(min=1, max=100000)
weight = field.Float(min=1)
jobs = orm.List(type=Job, length=3)
genitalia = field.Char()
class Abundance(orm.EmbeddedDocument):
"""
Custom abundances class
"""
sample = field.Char()
abundance = field.Float()
