def main(args=None):
initialize_logging()
initialize_user_dir()
logfile = ConfigLoader().config.All.Logfile
if logfile is not None:
log_to_logfile(logfile)
parser = ArgParser(description="Hydrant: a tool which aims to "\
"simplify and accelerate the development and maintenance of workflows"\
" for FireCloud (FC).")
parser.add_argument('-V',
'--version',
action='version',
version='%(prog)s ' + __version__)
subparsers = parser.add_subparsers(dest='subcmd')
subparsers.required = True
install_commands(subparsers, ['init', 'build', 'push', 'validate', 'test'])
install_commands(subparsers, ['tutorial', 'sync', 'install', 'config'])
args, argv = parser.parse_known_args(args)
args.func(argv)
'--config',
type=task_config,
help='Config file with [Task <task_name>] sections ' +
'that may contain Src=<path/to/src>, ' +
'Image=<[registry/]namespcae/repo[:tag]>, and ' +
'any [Docker] section arguments to initialize ' +
'tasks with specified names, then copy source ' +
"code to each task's src directory and " +
"initialize each task's hydrant.cfg, or " +
'initialize WDL with prexisting docker image(s)')
parser.add_argument('workflow',
type=new_folder,
help='Name of template folder')
parser.add_argument('task',
nargs='*',
type=user_task,
help='Name of existing locally written task to ' +
'initialize with in the format of ' +
'<workflow>.<task|*>, with "<workflow>.*" ' +
'indicating all tasks in <workflow>')
args = parser.parse_args(args)
user_tasks = process_user_tasks(args.task, args.workflow)
generate_workflow(args.workflow, args.num_tasks, user_tasks, args.config
or ConfigLoader().config, args.package)
if __name__ == '__main__':
initialize_logging()
main()