Example #1
0
    def test_gencode(self):
        releases = genomes.releases(source='gencode', species='human')

        self.assertIsInstance(releases, list)
        self.assertTrue(len(releases) > 0)
        self.assertIsInstance(releases[0], str)
        self.assertTrue('27' in releases)
Example #2
0
    def test_ensembl(self):
        releases = genomes.releases(source='ensembl')

        self.assertIsInstance(releases, list)
        self.assertTrue(len(releases) > 0)
        self.assertTrue(84 in releases)
Example #3
0
 def test_bad_source(self):
     message = r'Source .* is not supported.'
     with self.assertRaisesRegex(ValueError, message):
         genomes.releases(source='invalid_source')