def test_rename_and_move(self):
self._test_rename_ephys_files()
# Test for 3A
misc.move_ephys_files(self.local_session_path_3A)
probe00_files = list(self.probe00_path_3A.rglob("*"))
probe00_file_names = [x.name for x in probe00_files]
probe01_files = list(self.probe01_path_3A.rglob("*"))
probe01_file_names = [x.name for x in probe01_files]
self.assertTrue(
"_spikeglx_ephysData_g0_t0.imec.ap.bin" in probe00_file_names
and "_spikeglx_ephysData_g0_t0.imec.ap.meta" in probe00_file_names
and "_spikeglx_ephysData_g0_t0.imec.lf.bin" in probe00_file_names
and "_spikeglx_ephysData_g0_t0.imec.lf.meta" in probe00_file_names
)
self.assertTrue(
"_spikeglx_ephysData_g0_t0.imec.ap.bin" in probe01_file_names
and "_spikeglx_ephysData_g0_t0.imec.ap.meta" in probe01_file_names
and "_spikeglx_ephysData_g0_t0.imec.lf.bin" in probe01_file_names
and "_spikeglx_ephysData_g0_t0.imec.lf.meta" in probe01_file_names
)
# Test for 3B
misc.move_ephys_files(self.local_session_path_3B)
probe00_files = list(self.probe00_path_3B.rglob("*"))
probe00_file_names = [x.name for x in probe00_files]
probe01_files = list(self.probe01_path_3B.rglob("*"))
probe01_file_names = [x.name for x in probe01_files]
nidq_files = list(self.raw_ephys_data_path_3B.glob("*.nidq.*"))
nidq_file_names = [x.name for x in nidq_files]
self.assertTrue(
"_spikeglx_ephysData_g0_t0.imec0.ap.bin" in probe00_file_names
and "_spikeglx_ephysData_g0_t0.imec0.ap.meta" in probe00_file_names
and "_spikeglx_ephysData_g0_t0.imec0.lf.bin" in probe00_file_names
and "_spikeglx_ephysData_g0_t0.imec0.lf.meta" in probe00_file_names
)
self.assertTrue(
"_spikeglx_ephysData_g0_t0.imec1.ap.bin" in probe01_file_names
and "_spikeglx_ephysData_g0_t0.imec1.ap.meta" in probe01_file_names
and "_spikeglx_ephysData_g0_t0.imec1.lf.bin" in probe01_file_names
and "_spikeglx_ephysData_g0_t0.imec1.lf.meta" in probe01_file_names
)
self.assertTrue(
"_spikeglx_ephysData_g0_t0.nidq.bin" in nidq_file_names
and "_spikeglx_ephysData_g0_t0.nidq.meta" in nidq_file_names
)
def test_rename_and_move(self):
self._test_rename_ephys_files()
# TODO: Move files from the bad folders to the local_probe folders?
# Test for 3A
misc.move_ephys_files(self.local_session_path_3A)
probe00_files = list(self.probe00_path_3A.rglob('*'))
probe00_file_names = [x.name for x in probe00_files]
probe01_files = list(self.probe01_path_3A.rglob('*'))
probe01_file_names = [x.name for x in probe01_files]
self.assertTrue(
'_spikeglx_ephysData_g0_t0.imec.ap.bin' in probe00_file_names
and '_spikeglx_ephysData_g0_t0.imec.ap.meta' in probe00_file_names
and '_spikeglx_ephysData_g0_t0.imec.lf.bin' in probe00_file_names
and '_spikeglx_ephysData_g0_t0.imec.lf.meta' in probe00_file_names)
self.assertTrue(
'_spikeglx_ephysData_g0_t0.imec.ap.bin' in probe01_file_names
and '_spikeglx_ephysData_g0_t0.imec.ap.meta' in probe01_file_names
and '_spikeglx_ephysData_g0_t0.imec.lf.bin' in probe01_file_names
and '_spikeglx_ephysData_g0_t0.imec.lf.meta' in probe01_file_names)
# Test for 3B
misc.move_ephys_files(self.local_session_path_3B)
probe00_files = list(self.probe00_path_3B.rglob('*'))
probe00_file_names = [x.name for x in probe00_files]
probe01_files = list(self.probe01_path_3B.rglob('*'))
probe01_file_names = [x.name for x in probe01_files]
nidq_files = list(self.raw_ephys_data_path_3B.glob('*.nidq.*'))
nidq_file_names = [x.name for x in nidq_files]
self.assertTrue(
'_spikeglx_ephysData_g0_t0.imec0.ap.bin' in probe00_file_names
and '_spikeglx_ephysData_g0_t0.imec0.ap.meta' in probe00_file_names
and '_spikeglx_ephysData_g0_t0.imec0.lf.bin' in probe00_file_names
and '_spikeglx_ephysData_g0_t0.imec0.lf.meta'
in probe00_file_names)
self.assertTrue(
'_spikeglx_ephysData_g0_t0.imec1.ap.bin' in probe01_file_names
and '_spikeglx_ephysData_g0_t0.imec1.ap.meta' in probe01_file_names
and '_spikeglx_ephysData_g0_t0.imec1.lf.bin' in probe01_file_names
and '_spikeglx_ephysData_g0_t0.imec1.lf.meta'
in probe01_file_names)
self.assertTrue(
'_spikeglx_ephysData_g0_t0.nidq.bin' in nidq_file_names
and '_spikeglx_ephysData_g0_t0.nidq.meta' in nidq_file_names)
def test_rename_and_move(self):
# Test for 3A
self._test_rename_ephys_files(self.session_path_3A, 4)
misc.move_ephys_files(self.session_path_3A)
probe_folders = list(self.session_path_3A.rglob("*probe*"))
self.assertTrue(
len(probe_folders) == 1
and probe_folders[0].parts[-1] == 'probe00')
expected = [
'_spikeglx_ephysData_g0_t0.imec.ap.bin',
'_spikeglx_ephysData_g0_t0.imec.ap.meta',
'_spikeglx_ephysData_g0_t0.imec.lf.bin',
'_spikeglx_ephysData_g0_t0.imec.lf.meta'
]
self.assertCountEqual(expected,
[x.name for x in probe_folders[0].glob('*')])
# Test for 3B
self._test_rename_ephys_files(self.session_path_3B, 14)
misc.move_ephys_files(self.session_path_3B)
probe_folders = sorted(self.session_path_3B.rglob("*probe*"))
# Check moved into 'probexx' folders
self.assertTrue(len(probe_folders) == 3)
self.assertCountEqual((f'probe0{x}' for x in range(3)),
[x.parts[-1] for x in probe_folders])
for i in range(3):
expected = [
f'_spikeglx_ephysData_g0_t0.imec{i}.ap.bin',
f'_spikeglx_ephysData_g0_t0.imec{i}.ap.meta',
f'_spikeglx_ephysData_g0_t0.imec{i}.lf.bin',
f'_spikeglx_ephysData_g0_t0.imec{i}.lf.meta'
]
self.assertCountEqual(expected,
[x.name for x in probe_folders[i].glob('*')])
nidq_files = self.session_path_3B.joinpath('raw_ephys_data').glob(
"*.nidq.*")
expected = [
'_spikeglx_ephysData_g0_t0.nidq.bin',
'_spikeglx_ephysData_g0_t0.nidq.meta'
]
self.assertCountEqual(expected, [x.name for x in nidq_files])