def report_health(one):
"""
Get a few indicators and label the json field of the corresponding lab with them
"""
status = {'python_version': sys.version,
'ibllib_version': pkg_resources.get_distribution("ibllib").version,
'phylib_version': pkg_resources.get_distribution("phylib").version,
'local_time': date2isostr(datetime.now())}
status.update(_get_volume_usage('/mnt/s0/Data', 'raid'))
status.update(_get_volume_usage('/', 'system'))
lab_names = _get_lab(one)
for ln in lab_names:
one.alyx.json_field_update(endpoint='labs', uuid=ln, field_name='json', data=status)
def report_health(one):
"""
Get a few indicators and label the json field of the corresponding lab with them
"""
def _run_command(cmd):
process = subprocess.Popen(cmd,
shell=True,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE)
info, error = process.communicate()
if process.returncode != 0:
return None
else:
return info.decode('utf-8').strip()
def _get_volume_usage(vol, label=''):
cmd = f'df {vol}'
res = _run_command(cmd)
# size_list = ['/dev/sdc1', '1921802500', '1427128132', '494657984', '75%', '/datadisk']
size_list = re.split(' +', res.split('\n')[-1])
fac = 1024**2
d = {
'total': int(size_list[1]) / fac,
'used': int(size_list[2]) / fac,
'volume': size_list[5]
}
return {f"{label}_{k}": d[k] for k in d}
status = {
'ibllib_version': pkg_resources.get_distribution("ibllib").version,
'phylib_version': pkg_resources.get_distribution("phylib").version,
'local_time': date2isostr(datetime.now())
}
status.update(_get_volume_usage('/mnt/s0/Data', 'raid'))
status.update(_get_volume_usage('/', 'system'))
lab_names = _get_lab(one)
for ln in lab_names:
one.alyx.json_field_update(endpoint='labs',
uuid=ln,
field_name='json',
data=status)