def showGui(par, title): """Updated version discriminates between string and numeric outputs to treat them accordingly""" numflags = {} gd = NonBlockingGenericDialog(title) s_keys = sorted(par.keys()) for nm in s_keys: if isinstance(par[nm], (int, float, long)): gd.addNumericField(nm, par[nm], 1) numflags[nm] = True else: gd.addStringField(nm, par[nm]) numflags[nm] = False gd.setOKLabel("Go on!") gd.setCancelLabel("Recompute..") gd.centerDialog(False) gd.setLocation(50, 100) gd.showDialog() if gd.wasCanceled(): rep = True else: rep = False for nm in s_keys: if numflags[nm]: par[nm] = gd.getNextNumber() else: par[nm] = gd.getNextString().encode("ascii", "replace") return par, rep
def displayInfoDialog(text, title = 'Info'): global infoDialog infoDialog = NonBlockingGenericDialog(title) infoDialog.addMessage(text) infoDialog.setLocation(0,0) infoDialog.setSize(400,800) infoDialog.show() return infoDialog
def measure_gd(src_folder,file_names): from javax.swing import JButton gd = NonBlockingGenericDialog("Loci to compartment") gd.setResizable(True) gd.pack() gd.addMessage("Draw a freehand ROI aound loci and closest \n compartment(e.g. speckle) and press 0 on keyboard.") gd.addMessage("To load next image press Next Image button.") next_imp_bt = JButton('Next Image', actionPerformed=load_next_image) gd.add(next_imp_bt) gd.setLocation(10,10) gd.setAlwaysOnTop(True) gd.hideCancelButton() gd.showDialog() # if gd.wasOKed(): IJ.log( "Measurement done! You're welcome!")
def measure_gd(): # Dialouge box for measurements. # It from javax.swing import JButton gd = NonBlockingGenericDialog("Loci to compartment") gd.setResizable(True) gd.pack() gd.addMessage( "Draw a freehand ROI around the loci and closest \ncompartment(e.g. speckle) and press 0 on keyboard." ) next_imp_bt = JButton('Analyze active image', actionPerformed=analyze_image) gd.add(next_imp_bt) gd.setLocation(10, 10) gd.setAlwaysOnTop(True) gd.hideCancelButton() gd.showDialog() # if gd.wasOKed(): IJ.log("Measurement done! Happy FISHing")
im = IJ.getImage() if im.getNChannels() == 1: LUTarray = [LUT.createLutFromColor(Color.WHITE)] elif im.getNChannels() == 2: LUTarray = [LUT.createLutFromColor(Color.RED),LUT.createLutFromColor(Color.WHITE)] elif im.getNChannels() == 3: LUTarray = [LUT.createLutFromColor(Color.GREEN),LUT.createLutFromColor(Color.RED),LUT.createLutFromColor(Color.WHITE)] elif im.getNChannels() == 4: LUTarray = [LUT.createLutFromColor(Color.BLUE),LUT.createLutFromColor(Color.RED),LUT.createLutFromColor(Color.GREEN),LUT.createLutFromColor(Color.WHITE)] elif im.getNChannels() == 5: LUTarray = [LUT.createLutFromColor(Color.BLUE),LUT.createLutFromColor(Color.RED),LUT.createLutFromColor(Color.GREEN),LUT.createLutFromColor(Color.YELLOW),LUT.createLutFromColor(Color.WHITE)] else: LUTarray = [] nbgd = NonBlockingGenericDialog("Pick freehand ROI") nbgd.setLocation(0,0) nbgd.addMessage("OK to run, cancel to exit") nbgd.showDialog() isContinue = nbgd.wasOKed() while isContinue: roi = im.getRoi() if (roi is not None): float_poly = roi.getFloatPolygon() containing_tiles_superlist = [] for i in range(float_poly.npoints): containing_tiles_superlist.append(find_containing_tiles([float_poly.xpoints[i],float_poly.ypoints[i],0],coords_vals,scale_info[1],scale_info[2])) upscaled_coords = upscale_coords(coords,scale_info[0]) containing_tiles_dict = rearrange_tile_list(containing_tiles_superlist) copy_fullsize_tiles(["tile_"+key for key in containing_tiles_dict.keys()],parentLSMFilePath+"_tiles/",parentLSMFilePath+"_tiles/subtiles/",".ome.tif") subupcoords_vals = normalize_coords_in_list(get_list_from_dict(["tile_"+key for key in containing_tiles_dict.keys()],upscaled_coords)) hadStitched = False