# Add both to the new stack
newStack.addSlice(None, cp1)
newStack.addSlice(None, cp2)
# Create a new ImagePlus with the new stack newStack
newImp = ImagePlus("my composite", newStack)
newImp.setCalibration(imp1.getCalibration().copy())
# Tell the ImagePlus to represent the slices in its stack
# in hyperstack form, and open it as a CompositeImage:
nChannels = 2 # two color channels
nSlices = stack1.getSize() # the number of slices of the original stack
nFrames = 1 # only one time point
newImp.setDimensions(nChannels, nSlices, nFrames)
#comp = ImagePlus.CompositeImage(newImp, CompositeImage.COMPOSITE)
comp = ImagePlus.CompositeImage(newImp)
comp.show()
imp1 = comp
else:
print "Opening single channel:"
print "\t" + filepath1
imp1 = IJ.openImage(filepath1)
imp1.show()
myCalibration = imp1.getCalibration()
myCalibration.setUnit("um")
myCalibration.pixelWidth = float(voxelx)
myCalibration.pixelHeight = float(voxely)
myCalibration.pixelDepth = float(voxelz)
imp1.setCalibration(myCalibration)
