def test(self):
#test the "selectAll" and "clearAll" functions
self.testProject.dataMgr[
self.testProject.dataMgr.
_activeImageNumber].Object_Picking.selectAll()
if self.testProject.dataMgr[
self.testProject.dataMgr._activeImageNumber].overlayMgr[
"Objects/Selection Result"] is None:
self.finalize(False)
else:
rv = TestHelperFunctions.compareResultsWithFile(
self.testProject,
self.testProject.listOfResultOverlays,
self.testProject.listOfFilenames,
tolerance=0)
if rv:
self.testProject.dataMgr[
self.testProject.dataMgr.
_activeImageNumber].Object_Picking.clearAll()
data = self.testProject.dataMgr[
self.testProject.dataMgr._activeImageNumber].overlayMgr[
"Objects/Selection Result"][:]
if len(numpy.nonzero(data)[0]) != 0:
self.finalize(False)
else:
self.finalize(True)
else:
self.finalize(False)
def test_WholeModule(self):
# compute results
self.testProject.automaticSegmentationMgr.computeResults(self.testProject.input)
# ...add overlays
self.testProject.automaticSegmentationMgr.finalizeResults()
# compare obtained result to ground truth result
equalOverlays = TestHelperFunctions.compareResultsWithFile(self.testProject.automaticSegmentationMgr, self.testProject.listOfResultOverlays, self.testProject.listOfFilenames)
self.assertEqual(equalOverlays, True)
def test_AddFile(self):
project = projectClass.Project("test", "test", "test")
fileList = [os.path.join(self.testdir , "colorballs.png"), os.path.join(self.testdir, "zebra.png")]
#fileList = [str(self.testdir + "zebra.jpg"), str(self.testdir + "zebra.jpg")]
project.addFile(fileList)
project.saveToDisk(self.outputfile)
same = TestHelperFunctions.compareH5Files(self.outputfile, self.groundtruthfile)
print "test add file result: ", same
self.assertEqual(same, True)
def test(self):
remove_fvu = fakeVolumeUpdate(self.testProject.fvu._data, erasing=True)
fakelabellist = []
fakelabellist.append(remove_fvu)
self.testProject.dataMgr[self.testProject.dataMgr._activeImageNumber].Object_Picking.selectAll()
self.testProject.dataMgr[self.testProject.dataMgr._activeImageNumber].Object_Picking.newLabels(fakelabellist)
if self.testProject.dataMgr[self.testProject.dataMgr._activeImageNumber].overlayMgr["Objects/Selection Result"] is None:
self.finalize(False)
else:
rv = TestHelperFunctions.compareResultsWithFile(self.testProject, self.testProject.listOfResultOverlays, self.testProject.listOfFilenames, tolerance = 0)
self.finalize(rv)
def test_WholeModule(self):
# compute results
self.testProject.automaticSegmentationMgr.computeResults(self.testProject.input)
# ...add overlays
self.testProject.automaticSegmentationMgr.finalizeResults()
#obtained = self.testProject.dataMgr[self.testProject.dataMgr._activeImageNumber].overlayMgr[self.testProject.listOfResultOverlays[0]]
#dataImpex.DataImpex.exportOverlay("c:/new_segmentation_result", "h5", obtained)
# compare obtained result to ground truth result
equalOverlays = TestHelperFunctions.compareResultsWithFile(self.testProject.automaticSegmentationMgr, self.testProject.listOfResultOverlays, self.testProject.listOfFilenames)
self.assertEqual(equalOverlays, True)
def test(self):
#test the object selection results from labels from a file
try:
fakelabellist = []
fakelabellist.append(self.testProject.fvu)
self.testProject.dataMgr[self.testProject.dataMgr._activeImageNumber].Object_Picking.newLabels(fakelabellist)
if self.testProject.dataMgr[self.testProject.dataMgr._activeImageNumber].overlayMgr["Objects/Selection Result"] is None:
self.finalize(False)
else:
rv = TestHelperFunctions.compareResultsWithFile(self.testProject, self.testProject.listOfResultOverlays, self.testProject.listOfFilenames, tolerance = 0)
self.finalize(rv)
except Exception, e:
print e
self.finalize(False)
def test_AddFile(self):
project = projectClass.Project("test", "test", "test")
fileList = [
os.path.join(self.testdir, "colorballs.png"),
os.path.join(self.testdir, "zebra.png")
]
#fileList = [str(self.testdir + "zebra.jpg"), str(self.testdir + "zebra.jpg")]
project.addFile(fileList)
project.saveToDisk(self.outputfile)
same = TestHelperFunctions.compareH5Files(self.outputfile,
self.groundtruthfile)
print "test add file result: ", same
self.assertEqual(same, True)
def test(self):
#test the "selectAll" and "clearAll" functions
self.testProject.dataMgr[self.testProject.dataMgr._activeImageNumber].Object_Picking.selectAll()
if self.testProject.dataMgr[self.testProject.dataMgr._activeImageNumber].overlayMgr["Objects/Selection Result"] is None:
self.finalize(False)
else:
rv = TestHelperFunctions.compareResultsWithFile(self.testProject, self.testProject.listOfResultOverlays, self.testProject.listOfFilenames, tolerance = 0)
if rv:
self.testProject.dataMgr[self.testProject.dataMgr._activeImageNumber].Object_Picking.clearAll()
data = self.testProject.dataMgr[self.testProject.dataMgr._activeImageNumber].overlayMgr["Objects/Selection Result"][:]
if len(numpy.nonzero(data)[0])!=0:
self.finalize(False)
else:
self.finalize(True)
else:
self.finalize(False)
def test(self):
remove_fvu = fakeVolumeUpdate(self.testProject.fvu._data, erasing=True)
fakelabellist = []
fakelabellist.append(remove_fvu)
self.testProject.dataMgr[
self.testProject.dataMgr.
_activeImageNumber].Object_Picking.selectAll()
self.testProject.dataMgr[self.testProject.dataMgr.
_activeImageNumber].Object_Picking.newLabels(
fakelabellist)
if self.testProject.dataMgr[
self.testProject.dataMgr._activeImageNumber].overlayMgr[
"Objects/Selection Result"] is None:
self.finalize(False)
else:
rv = TestHelperFunctions.compareResultsWithFile(
self.testProject,
self.testProject.listOfResultOverlays,
self.testProject.listOfFilenames,
tolerance=0)
self.finalize(rv)
def test(self):
#test the object selection results from labels from a file
try:
fakelabellist = []
fakelabellist.append(self.testProject.fvu)
self.testProject.dataMgr[
self.testProject.dataMgr.
_activeImageNumber].Object_Picking.newLabels(fakelabellist)
if self.testProject.dataMgr[
self.testProject.dataMgr._activeImageNumber].overlayMgr[
"Objects/Selection Result"] is None:
self.finalize(False)
else:
rv = TestHelperFunctions.compareResultsWithFile(
self.testProject,
self.testProject.listOfResultOverlays,
self.testProject.listOfFilenames,
tolerance=0)
self.finalize(rv)
except Exception, e:
print e
self.finalize(False)
