class CoLoc(object):
"""Placeholder"""
def __init__(self):
self.image_manager = ImageManager()
self.cell_manager = CellManager()
self.coloc_processor = CoLocProcessor()
self.reports_manager = ReportsManager()
self.cell_picker = CellPicker()
def load_images(self):
"""Placeholder"""
self.image_manager.load_images()
def create_mask(self):
"""Placeholder"""
self.image_manager.create_cells_mask()
def process_cells(self):
"""Placeholder"""
self.cell_manager.process_cells(self.image_manager.cells_mask)
def pearsons_test(self):
"""Placeholder"""
self.coloc_processor.pearsons_test(self.image_manager, self.cell_manager)
def pearsons_test_percentile(self):
"""Placeholder"""
self.coloc_processor.cell_pearsons_test_percentile(self.image_manager,
self.cell_manager,
0.3)
def select_cells(self):
self.cell_picker.select_cells(self.cell_manager)
def generate_pearsons_report(self):
"""Placeholder"""
self.reports_manager.pearsons_report(self.image_manager, self.cell_manager,
self.coloc_processor)
def generate_pearsons_report_percentile(self):
"""Placeholder"""
self.reports_manager.pearsons_report_percentile(self.image_manager,
self.cell_manager,
self.coloc_processor)
