def test_forward_read_not_populated(self):
with self.assertRaises(Exception):
validate_mandatory_read_fields(
Spreadsheet.new_instance("1234567890123456", [
RawRead(sample_accession=None,
forward_read=None,
reverse_read=None,
sample_name='SAMPLE1',
taxon_id="1280",
library_name='LIB1')
]))
def test_mandatory_fields_for_reads_are_populated_single_read(self):
self.assertEqual([],
validate_mandatory_read_fields(
Spreadsheet.new_instance("1234567890123456", [
RawRead(sample_accession=None,
forward_read='READ.fastq.gz',
reverse_read=None,
sample_name='SAMPLE1',
taxon_id="1280",
library_name='LIB1')
])))
def test_library_name_not_populated(self):
self.assertEqual([
"Missing library name for RawRead(forward_read='READ.fastq.gz', reverse_read=None, "
"sample_name='SAMPLE1', sample_accession=None, taxon_id='1280', library_name=None)"
],
validate_mandatory_read_fields(
Spreadsheet.new_instance("1234567890123456", [
RawRead(sample_accession=None,
forward_read='READ.fastq.gz',
reverse_read=None,
sample_name='SAMPLE1',
taxon_id="1280",
library_name=None)
])))