Python get_xml Examples

Example #1

File: reach_api.py Project: lidiaiprou/indra

def process_pmc(pmc_id):
    xml_str = pmc_client.get_xml(pmc_id)
    with tempfile.NamedTemporaryFile() as fh:
        fh.write(xml_str)
        fh.flush()
        rp = process_nxml(fh.name)
    return rp

Example #2

File: reach_api.py Project: gberriz/indra

def process_pmc(pmc_id):
    if pmc_id.upper().startswith('PMC'):
        pmc_id = pmc_id[3:]
    xml_str = pmc_client.get_xml(pmc_id)
    if xml_str is None:
        return None
    with tempfile.NamedTemporaryFile() as fh:
        fh.write(xml_str)
        fh.flush()
        rp = process_nxml(fh.name)
    return rp

Example #3

File: reach_api.py Project: abassobl/indra

def process_pmc(pmc_id):
    if pmc_id.upper().startswith('PMC'):
        pmc_id = pmc_id[3:]
    xml_str = pmc_client.get_xml(pmc_id)
    if xml_str is None:
        return None
    with tempfile.NamedTemporaryFile() as fh:
        fh.write(xml_str)
        fh.flush()
        rp = process_nxml(fh.name)
    return rp

Example #4

File: test_pmc_client.py Project: abassobl/indra

def test_get_xml_invalid():
    pmc_id = '9999999'
    xml_str = pmc_client.get_xml(pmc_id)
    assert(xml_str is None)

Example #5

File: test_pmc_client.py Project: abassobl/indra

def test_get_xml():
    pmc_id = '4322985'
    xml_str = pmc_client.get_xml(pmc_id)
    assert(xml_str is not None)

Example #6

File: test_pmc_client.py Project: abassobl/indra

def test_get_xml_invalid():
    pmc_id = '9999999'
    xml_str = pmc_client.get_xml(pmc_id)
    assert (xml_str is None)

Example #7

File: test_pmc_client.py Project: abassobl/indra

def test_get_xml():
    pmc_id = '4322985'
    xml_str = pmc_client.get_xml(pmc_id)
    assert (xml_str is not None)