Python get_bio_hierarchies Examples

Example #1

File: update_resources.py Project: RohitChattopadhyay/indra

def update_hierarchy_pickle():
    fname = os.path.join(path, 'bio_hierarchies.pkl')
    hierarchies = get_bio_hierarchies(from_pickle=False)
    with open(fname, 'wb') as fh:
        pickle.dump(hierarchies, fh, protocol=4)

Example #2

File: test_hierarchy_manager.py Project: johnbachman/indra

def test_bio_hierarchy_pickles():
    h1 = get_bio_hierarchies()
    h2 = get_bio_hierarchies(from_pickle=False)
    for key in h1.keys():
        assert len(h1[key].graph) == len(h2[key].graph)

Example #3

File: test_hierarchy_manager.py Project: luisviolinist/indra

def test_bio_hierarchy_pickles():
    h1 = get_bio_hierarchies()
    h2 = get_bio_hierarchies(from_pickle=False)
    for key in h1.keys():
        assert len(h1[key].graph) == len(h2[key].graph)

Example #4

File: update_resources.py Project: sorgerlab/indra

def update_hierarchy_pickle():
    fname = os.path.join(path, 'bio_hierarchies.pkl')
    hierarchies = get_bio_hierarchies(from_pickle=False)
    with open(fname, 'wb') as fh:
        pickle.dump(hierarchies, fh, protocol=4)