Python process_json_bio Examples

Example #1

File: api.py Project: steppi/indra

    def post(self):
        """Process an EIDOS JSON-LD and return biology INDRA Statements.

        Parameters
        ----------
        jsonld : str
            The JSON-LD string to be processed.

        Returns
        -------
        statements : list[indra.statements.Statement.to_json()]
            A list of extracted INDRA Statements.
        """
        args = request.json
        eidos_json = args.get('jsonld')
        jj = json.loads(eidos_json)
        ep = eidos.process_json_bio(jj)
        return _stmts_from_proc(ep)

Example #2

File: __init__.py Project: kkaris/indra_reading

 def parse_results(content):
     from indra.tools.assemble_corpus import filter_grounded_only
     ep = eidos.process_json_bio(content)
     ep.statements = filter_grounded_only(ep.statements)
     return ep

Example #3

File: __init__.py Project: pagreene/indra_reading

 def parse_results(content):
     return eidos.process_json_bio(content)