def _from_json(cls, json_dict):
mod_type = json_dict.get('mod_type')
if not mod_type:
logger.error('ModCondition missing mod_type.')
return None
if mod_type not in modtype_to_modclass.keys():
logger.warning('Unknown modification type: %s' % mod_type)
residue = json_dict.get('residue')
position = json_dict.get('position')
is_modified = json_dict.get('is_modified')
if is_modified is None:
logger.warning('ModCondition missing is_modified, defaulting '
'to True')
is_modified = True
mc = ModCondition(mod_type, residue, position, is_modified)
return mc
def _from_json(cls, json_dict):
mod_type = json_dict.get('mod_type')
if not mod_type:
logger.error('ModCondition missing mod_type.')
return None
if mod_type not in modtype_to_modclass.keys():
logger.warning('Unknown modification type: %s' % mod_type)
residue = json_dict.get('residue')
position = json_dict.get('position')
is_modified = json_dict.get('is_modified')
if is_modified is None:
logger.warning('ModCondition missing is_modified, defaulting '
'to True')
is_modified = True
mc = ModCondition(mod_type, residue, position, is_modified)
assert(unicode_strs(mc))
return mc