def test_trips_processor_offline():
"""Smoke test to see if imports and executes without error. Doesn't
check for correctness of parse or of assembled model."""
pa = PysbAssembler()
tp = trips_api.process_xml(open(test_small_file).read())
pa.add_statements(tp.statements)
model = pa.make_model()
def test_trips_processor_offline():
"""Smoke test to see if imports and executes without error. Doesn't
check for correctness of parse or of assembled model."""
pa = PysbAssembler()
tp = trips_api.process_xml(open(test_small_file).read())
pa.add_statements(tp.statements)
model = pa.make_model()
def text_to_sbgn(text=None, trips_xml=None):
if (text is None and trips_xml is None) or (text is not None and trips_xml is not None):
raise ValueError("Must provide ONE of 'text' or 'trips_xml'")
elif text is not None:
tp = trips_api.process_text(text)
elif trips_xml is not None:
tp = trips_api.process_xml(trips_xml)
else:
raise RuntimeError("Unexpected or impossible combination of arguments")
sa = SBGNAssembler()
sa.add_statements(tp.statements)
sbgn_output = sa.make_sbgn()
return sbgn_output
def text_to_sbgn(text=None, trips_xml=None):
if ((text is None and trips_xml is None)
or (text is not None and trips_xml is not None)):
raise ValueError("Must provide ONE of 'text' or 'trips_xml'")
elif text is not None:
tp = trips_api.process_text(text)
elif trips_xml is not None:
tp = trips_api.process_xml(trips_xml)
else:
raise RuntimeError("Unexpected or impossible combination of arguments")
sa = SBGNAssembler()
sa.add_statements(tp.statements)
sbgn_output = sa.make_model()
return sbgn_output
