Python ManagePriors.align_priors_to_expression Examples

Example #1

File: test_priors.py Project: elifesciences-publications/inferelator

    def test_align_priors_2(self):
        npr = self.priors_data
        npr.index = list(range(npr.shape[0]))

        with self.assertRaises(ValueError):
            npr = ManagePriors.align_priors_to_expression(
                npr, self.expression_matrix)

Example #2

 def test_align_priors_1(self):
     npr = self.priors_data.iloc[list(range(10)), :]
     npr = ManagePriors.align_priors_to_expression(npr,
                                                   self.data.gene_names)
     self.assertEqual(len(npr.index), len(self.data.gene_names))
     self.assertListEqual(npr.columns.tolist(),
                          self.priors_data.columns.tolist())
     self.assertListEqual(npr.index.tolist(), self.data.gene_names.tolist())