def test_load_csv(mock_get_data_dir):
from inflammation.models import load_csv
with patch('numpy.loadtxt') as mock_loadtxt:
load_csv('test.csv')
name, args, kwargs = mock_loadtxt.mock_calls[0]
assert kwargs['fname'] == '/data_dir/test.csv'
load_csv('/test.csv')
name, args, kwargs = mock_loadtxt.mock_calls[1]
assert kwargs['fname'] == '/test.csv'
def main():
"""The MVC Controller of the patient inflammation data system.
The Controller is responsible for:
- selecting the necessary models and views for the current task
- passing data between models and views
"""
parser = argparse.ArgumentParser(
description='A basic patient inflammation data management system')
parser.add_argument(
'infiles',
nargs='+',
help='Input CSV(s) containing inflammation series for each patient')
args = parser.parse_args()
InFiles = args.infiles
if not isinstance(InFiles, list):
InFiles = [args.infiles]
for filename in InFiles:
inflammation_data = models.load_csv(filename)
view_data = {
'average': models.daily_mean(inflammation_data),
'max': models.daily_max(inflammation_data),
'min': models.daily_min(inflammation_data)
}
views.visualize(view_data)
def main(args):
"""The MVC Controller of the patient data system.
The Controller is responsible for:
- selecting the necessary models and views for the current task
- passing data between models and views
"""
infiles = args.infiles
if not isinstance(infiles, list):
infiles = [args.infiles]
for filename in infiles:
inflammation_data = models.load_csv(filename)
view_data = {'average': models.daily_mean(inflammation_data),
'max': models.daily_max(inflammation_data),
'min': models.daily_min(inflammation_data)}
views.visualize(view_data)
