Python Patch.filter_cluster Examples

Example #1

File: clean_data_3.py Project: xiki-tempula/sc_py

'15080408'
]
tres = [
20,
30,
20
]
tcrit = [
100,
70,
100
]
popen =[]
for index, name in enumerate(name_list):
    patch = Patch('/Users/zhiyiwu/Documents/pharmfit/raw trace/3/{}.SCN'.format(name))
    patch.read_scn(tres=tres[index], tcrit=tcrit[index])

maxopen = 1
maxshut = float('inf')
def rule(cluster, maxopen, maxshut): 
    if (cluster.mean_open > maxopen) or (cluster.mean_shut > maxshut): 
        return False
    else:
        return True


for i in range(3):
    patch = Patch('/Users/zhiyiwu/Documents/pharmfit/raw trace/3/{}.SCN'.format(name_list[i]))
    patch.read_scn(tres=tres[i], tcrit=tcrit[i])
    patch.filter_cluster(rule, maxopen, maxshut)
    patch.write_scn()

Example #2

File: change.py Project: xiki-tempula/sc_py

def change(name, tres, tcrit, minPopen = 0, maxPopen = 1.1):
    new_patch = Patch('./set/{}.SCN'.format(name))
    new_patch.read_scn(tres=tres, tcrit=tcrit)
    new_patch.filter_cluster(rule, minPopen, maxPopen)
    new_patch.write_scn()