def save_crops(dir, overwrite_existing, template):
dir = Path(dir)
export = DocumentExport(UserTemplate.load(template) if template else DWC)
for p in dir.glob('*' + InselectDocument.EXTENSION):
try:
debug_print('Loading [{0}]'.format(p))
doc = InselectDocument.load(p)
validation = export.validation_problems(doc)
if validation.any_problems:
print(
u'Not saving crops for [{0}] because there are validation '
u'problems'.format(p)
)
for msg in format_validation_problems(validation):
print(msg)
elif not overwrite_existing and doc.crops_dir.is_dir():
print(u'Crops dir [{0}] exists - skipping'.format(doc.crops_dir))
else:
print(u'Will save crops for [{0}] to [{1}]'.format(p, doc.crops_dir))
debug_print(u'Loading full-resolution scanned image')
doc.scanned.array
debug_print(u'Saving crops')
export.save_crops(doc)
except Exception:
print(u'Error saving crops from [{0}]'.format(p))
traceback.print_exc()
def export_csv(dir, overwrite_existing, template):
dir = Path(dir)
export = DocumentExport(UserTemplate.load(template) if template else DWC)
for p in dir.glob('*' + InselectDocument.EXTENSION):
try:
debug_print('Loading [{0}]'.format(p))
doc = InselectDocument.load(p)
validation = export.validation_problems(doc)
csv_path = export.csv_path(doc)
if validation.any_problems:
print(
'Not exporting metadata for [{0}] because there are '
'validation problems'.format(p)
)
for msg in format_validation_problems(validation):
print(msg)
elif not overwrite_existing and csv_path.is_file():
print('CSV file [{0}] exists - skipping'.format(csv_path))
else:
print('Writing CSV for [{0}]'.format(p))
export.export_csv(doc)
except KeyboardInterrupt:
raise
except Exception:
print('Error saving CSV from [{0}]'.format(p))
traceback.print_exc()
def save_crops(dir, overwrite_existing, template):
dir = Path(dir)
export = DocumentExport(UserTemplate.load(template) if template else DWC)
for p in dir.glob('*' + InselectDocument.EXTENSION):
try:
debug_print('Loading [{0}]'.format(p))
doc = InselectDocument.load(p)
validation = export.validation_problems(doc)
if validation.any_problems:
print(
'Not saving crops for [{0}] because there are validation '
'problems'.format(p)
)
for msg in format_validation_problems(validation):
print(msg)
elif not overwrite_existing and doc.crops_dir.is_dir():
print('Crops dir [{0}] exists - skipping'.format(doc.crops_dir))
else:
print('Will save crops for [{0}] to [{1}]'.format(p, doc.crops_dir))
debug_print('Loading full-resolution scanned image')
doc.scanned.array
debug_print('Saving crops')
export.save_crops(doc)
except KeyboardInterrupt:
raise
except Exception:
print('Error saving crops from [{0}]'.format(p))
traceback.print_exc()
def test_from_file(self):
"Load from a YAML file"
doc = UserTemplate.load(TESTDATA / 'test.inselect_template')
self.assertEqual(doc.name, "Test user template")
self.assertEqual(doc.cropped_file_suffix, '.jpg')
self.assertEqual(doc.thumbnail_width_pixels, 4096)
self.assertEqual(4, len(doc.fields))
self.assertEqual('Department', doc.fields[0].name)
self.assertEqual('Palaeontology', doc.fields[0].fixed_value)
self.assertEqual('catalogNumber', doc.fields[1].name)
self.assertEqual('Catalog number', doc.fields[1].label)
self.assertEqual('http://rs.tdwg.org/dwc/terms/catalogNumber',
doc.fields[1].uri)
self.assertTrue(doc.fields[1].mandatory)
self.assertEqual('Catalog number', doc.fields[1].label)
self.assertEqual('Location', doc.fields[2].name)
self.assertTrue(doc.fields[2].mandatory)
self.assertEqual('Taxonomy', doc.fields[3].name)
self.assertTrue(doc.fields[3].mandatory)
def test_save_crops_invalid_document(self, mock_question, mock_setdetailed,
mock_settext):
"""The user wants to export crops for a document with many validation
failures
"""
w = self.window
# This document has 15 validation problems with this template
w.open_document(path=TESTDATA / 'shapes.inselect')
template = UserTemplate.load(TESTDATA / 'test.inselect_template')
w.save_crops(user_template=template)
# Close the document
self.assertTrue(w.close_document())
# Should have been called
self.assertEqual(1, mock_settext.call_count)
self.assertIn('The document contains 15 validation problems',
mock_settext.call_args[0][0])
# Detailed text should not have been given
self.assertEqual(1, mock_setdetailed.call_count)
def _load(self, path):
"Loads the UserTemplate in path"
debug_print('UserTemplateChoice._load [{0}]'.format(path))
return UserTemplate.load(path)
def _load(self, path):
"Loads the UserTemplate in path"
debug_print('UserTemplateChoice._load [{0}]'.format(path))
return UserTemplate.load(path)