def test_match_reference_doesnt_touch_curated(inspire_app):
cited_record_json = {
"$schema": "http://localhost:5000/schemas/records/hep.json",
"_collections": ["Literature"],
"control_number": 1,
"document_type": ["article"],
"dois": [{
"value": "10.1371/journal.pone.0188398"
}],
}
create_record("lit", cited_record_json)
reference = {
"curated_relation": True,
"record": {
"$ref": "http://localhost:5000/api/literature/42"
},
"reference": {
"dois": ["10.1371/journal.pone.0188398"]
},
}
schema = load_schema("hep")
subschema = schema["properties"]["references"]
assert validate([reference], subschema) is None
reference = match_reference(reference)
assert reference["record"][
"$ref"] == "http://localhost:5000/api/literature/42"
expected_control_number = [42]
result_coontrol_number = match_reference_control_numbers(reference)
assert expected_control_number == result_coontrol_number
def test_match_reference_on_texkey(inspire_app):
cited_record_json = {
"$schema": "http://localhost:5000/schemas/records/hep.json",
"_collections": ["Literature"],
"control_number": 1,
"document_type": ["article"],
"texkeys": ["Giudice:2007fh"],
"titles": [{
"title": "The Strongly-Interacting Light Higgs"
}],
}
create_record("lit", cited_record_json)
reference = {"reference": {"texkey": "Giudice:2007fh"}}
schema = load_schema("hep")
subschema = schema["properties"]["references"]
assert validate([reference], subschema) is None
reference = match_reference(reference)
assert reference["record"][
"$ref"] == "http://localhost:5000/api/literature/1"
assert validate([reference], subschema) is None
expected_control_number = [1]
result_coontrol_number = match_reference_control_numbers(reference)
assert expected_control_number == result_coontrol_number
def test_match_reference_for_data_config(inspire_app):
"""Test reference matcher for the JCAP and JHEP configuration"""
cited_record_json = {
"$schema": "http://localhost:5000/schemas/records/data.json",
"_collections": ["Data"],
"control_number": 1,
"dois": [{
"value": "10.5281/zenodo.11020"
}],
}
create_record("dat", cited_record_json)
reference = {
"reference": {
"dois": ["10.5281/zenodo.11020"],
"publication_info": {
"year": 2007
},
}
}
reference = match_reference(reference)
assert reference["record"]["$ref"] == "http://localhost:5000/api/data/1"
expected_control_number = [1]
result_coontrol_number = match_reference_control_numbers(reference)
assert expected_control_number == result_coontrol_number
def match_reference(self, query_string):
if not query_string:
return None
reference = self.query_string_to_reference_object_or_none(query_string)
if not reference:
return None
reference = self.normalize_journal_title(reference)
reference = self.convert_old_publication_info_to_new(reference)
reference_match_control_numbers = match_reference_control_numbers(
reference)
if not reference_match_control_numbers:
LOGGER.info(
"Reference didn't match.",
query_string=query_string,
reference=reference,
)
return None
must = []
for reference in reference_match_control_numbers:
must.append(Q("term", control_number=reference))
return (InspireSearch().params(version=True).query(Q(
"bool", must=must)).execute())
def test_match_reference_on_texkey_has_lower_priority_than_pub_info(inspire_app):
cited_record_with_texkey_json = {
"$schema": "http://localhost:5000/schemas/records/hep.json",
"_collections": ["Literature"],
"control_number": 1,
"document_type": ["article"],
"texkeys": ["MyTexKey:2008fh"],
"titles": [{"title": "The Strongly-Interacting Light Higgs"}],
}
create_record("lit", cited_record_with_texkey_json)
cited_record_with_pub_info_json = {
"$schema": "http://localhost:5000/schemas/records/hep.json",
"_collections": ["Literature"],
"control_number": 2,
"document_type": ["article"],
"publication_info": [
{
"artid": "100",
"journal_title": "JHEP",
"journal_volume": "100",
"page_start": "100",
"year": 2020,
}
],
"titles": [{"title": "The Strongly-Interacting Light Higgs"}],
}
create_record("lit", cited_record_with_pub_info_json)
reference = {
"reference": {
"texkey": "MyTexKey:2008fh",
"publication_info": {
"artid": "100",
"journal_title": "JHEP",
"journal_volume": "100",
"page_start": "100",
"year": 2020,
},
}
}
schema = load_schema("hep")
subschema = schema["properties"]["references"]
assert validate([reference], subschema) is None
reference = match_reference(reference)
assert reference["record"]["$ref"] == "http://localhost:5000/api/literature/2"
assert validate([reference], subschema) is None
expected_control_number = [2, 1]
result_coontrol_number = match_reference_control_numbers(reference)
assert set(expected_control_number) == set(result_coontrol_number)
assert len(expected_control_number) == len(result_coontrol_number)
def test_match_reference_for_jcap_and_jhep_config(inspire_app):
"""Test reference matcher for the JCAP and JHEP configuration"""
cited_record_json = {
"$schema":
"http://localhost:5000/schemas/records/hep.json",
"_collections": ["Literature"],
"control_number":
1,
"document_type": ["article"],
"publication_info": [{
"artid": "045",
"journal_title": "JHEP",
"journal_volume": "06",
"page_start": "045",
"year": 2007,
}],
"titles": [{
"title": "The Strongly-Interacting Light Higgs"
}],
}
create_record("lit", cited_record_json)
reference = {
"reference": {
"publication_info": {
"artid": "045",
"journal_title": "JHEP",
"journal_volume": "06",
"page_start": "045",
"year": 2007,
}
}
}
schema = load_schema("hep")
subschema = schema["properties"]["references"]
assert validate([reference], subschema) is None
reference = match_reference(reference)
assert reference["record"][
"$ref"] == "http://localhost:5000/api/literature/1"
assert validate([reference], subschema) is None
expected_control_number = [1]
result_coontrol_number = match_reference_control_numbers(reference)
assert expected_control_number == result_coontrol_number
def test_match_pubnote_info_when_journal_is_missing_a_letter(inspire_app):
cited_record_with_pub_info_json = {
"$schema":
"http://localhost:5000/schemas/records/hep.json",
"_collections": ["Literature"],
"control_number":
1,
"document_type": ["article"],
"publication_info": [{
"artid": "101",
"journal_title": "Phys. Rev. B.",
"journal_volume": "100",
"page_start": "100",
"year": 2020,
}],
"titles": [{
"title": "The Strongly-Interacting Light Higgs"
}],
}
create_record("lit", cited_record_with_pub_info_json)
reference = {
"reference": {
"publication_info": {
"journal_title": "Phys. Rev.",
"journal_volume": "100",
"page_start": "100",
},
}
}
reference = match_reference(reference)
assert reference["record"][
"$ref"] == "http://localhost:5000/api/literature/1"
expected_control_number = [1]
result_control_number = match_reference_control_numbers(reference)
assert expected_control_number == result_control_number
def test_match_references_returns_five_references(inspire_app):
cited_record_with_pub_info_json_1 = {
"$schema":
"http://localhost:5000/schemas/records/hep.json",
"_collections": ["Literature"],
"control_number":
1,
"document_type": ["article"],
"publication_info": [{
"artid": "100",
"journal_title": "Phys. Rev. D.",
"journal_volume": "100",
"page_start": "100",
"year": 2020,
}],
"titles": [{
"title": "A cool title"
}],
}
create_record("lit", cited_record_with_pub_info_json_1)
cited_record_with_pub_info_json_2 = {
"$schema":
"http://localhost:5000/schemas/records/hep.json",
"_collections": ["Literature"],
"control_number":
2,
"document_type": ["article"],
"publication_info": [{
"artid": "100",
"journal_title": "Phys. Rev. A.",
"journal_volume": "100",
"page_start": "100",
"year": 2020,
}],
"titles": [{
"title": "A cool title"
}],
}
create_record("lit", cited_record_with_pub_info_json_2)
cited_record_with_pub_info_json_3 = {
"$schema":
"http://localhost:5000/schemas/records/hep.json",
"_collections": ["Literature"],
"control_number":
3,
"document_type": ["article"],
"publication_info": [{
"artid": "100",
"journal_title": "Phys. Rev. B.",
"journal_volume": "100",
"page_start": "100",
"year": 2020,
}],
"titles": [{
"title": "A cool title"
}],
}
create_record("lit", cited_record_with_pub_info_json_3)
cited_record_with_pub_info_json_4 = {
"$schema":
"http://localhost:5000/schemas/records/hep.json",
"_collections": ["Literature"],
"control_number":
4,
"document_type": ["article"],
"publication_info": [{
"artid": "100",
"journal_title": "Phys. Rev. C.",
"journal_volume": "100",
"page_start": "100",
"year": 2020,
}],
"titles": [{
"title": "A cool title"
}],
}
create_record("lit", cited_record_with_pub_info_json_4)
cited_record_with_pub_info_json_5 = {
"$schema":
"http://localhost:5000/schemas/records/hep.json",
"_collections": ["Literature"],
"control_number":
5,
"document_type": ["article"],
"publication_info": [{
"artid": "100",
"journal_title": "Phys. Rev. E.",
"journal_volume": "100",
"page_start": "100",
"year": 2020,
}],
"titles": [{
"title": "A cool title"
}],
}
cited_record_with_pub_info_json_6 = {
"$schema":
"http://localhost:5000/schemas/records/hep.json",
"_collections": ["Literature"],
"control_number":
6,
"document_type": ["article"],
"publication_info": [{
"artid": "100",
"journal_title": "Phys. Rev. E.",
"journal_volume": "100",
"page_start": "100",
"year": 2020,
}],
"titles": [{
"title": "A cool title"
}],
}
create_record("lit", cited_record_with_pub_info_json_5)
create_record("lit", cited_record_with_pub_info_json_6)
reference = {
"reference": {
"publication_info": {
"journal_title": "Phys. Rev.",
"journal_volume": "100",
"page_start": "100",
},
}
}
reference = match_reference_control_numbers(reference)
assert len(reference) == 5
