def test_normalize_journal_title(app):
journal_title = 'Physical Review'
abbreviated_journal_title = 'Phys.Rev.'
normalized_journal_title = normalize_journal_title(journal_title)
assert abbreviated_journal_title == normalized_journal_title
def normalize_journal_titles(obj, eng):
"""Normalize the journal titles
Normalize the journal titles stored in the `journal_title` field of each object
contained in `publication_info`.
Note:
The DB is queried in order to get the `$ref` of each journal and add it in
`journal_record`.
TODO:
Refactor: it must be checked that `normalize_journal_title` is appropriate.
Args:
obj: a workflow object.
eng: a workflow engine.
Returns:
None
"""
publications = obj.data.get('publication_info')
if not publications:
return None
for index, publication in enumerate(publications):
if 'journal_title' in publication:
normalized_title = normalize_journal_title(
publication['journal_title'])
obj.data['publication_info'][index][
'journal_title'] = normalized_title
ref_query = RecordMetadata.query.filter(
RecordMetadata.json['_collections'].op('?')(
'Journals')).filter(
cast(RecordMetadata.json['short_title'], String) ==
type_coerce(normalized_title, JSON))
result = db.session.execute(ref_query).fetchone()
if result:
obj.data['publication_info'][index][
'journal_record'] = result.records_metadata_json['self']
def normalize_journal_titles(obj, eng):
"""Normalize the journal titles
Normalize the journal titles stored in the `journal_title` field of each object
contained in `publication_info`.
Note:
The DB is queried in order to get the `$ref` of each journal and add it in
`journal_record`.
TODO:
Refactor: it must be checked that `normalize_journal_title` is appropriate.
Args:
obj: a workflow object.
eng: a workflow engine.
Returns:
None
"""
publications = obj.data.get('publication_info')
if not publications:
return None
for index, publication in enumerate(publications):
if 'journal_title' in publication:
normalized_title = normalize_journal_title(publication['journal_title'])
obj.data['publication_info'][index]['journal_title'] = normalized_title
ref_query = RecordMetadata.query.filter(
RecordMetadata.json['_collections'].op('?')('Journals')).filter(
cast(RecordMetadata.json['short_title'], String) == type_coerce(normalized_title, JSON))
result = db.session.execute(ref_query).fetchone()
if result:
obj.data['publication_info'][index]['journal_record'] = result.records_metadata_json['self']