Python RunCommand.build_conf Examples

Example #1

File: analysis.py Project: chris-zen/phd-thesis

	def build_conf(self):
		if self.case_name is None:
			self.case_name = self.project_id

		RunCommand.build_conf(self)
		
		self.case_conf_builder.add_value("project.id", self.project_id)

		if self.args.single_tumor:
			self.case_conf_builder.add_value("variants_only", True)
			self.case_conf_builder.add_value("skip_oncodrivefm", True)
			self.case_conf_builder.add_value("skip_oncodriveclust", True)

Example #2

File: batch_analysis.py Project: chris-zen/phd-thesis

	def build_conf(self):
		RunCommand.build_conf(self)