def test_create_matchable_name(self):
'''
This can act as a regression test of the whole function.
'''
self.assertEquals(create_matchable_name('Surname, Name'),
'name surname')
self.assertEquals(create_matchable_name('Surname'), 'surname')
self.assertEquals(create_matchable_name('Surname, Name (removed)'),
'name surname')
self.assertEquals(create_matchable_name('Surname, Name'),
'name surname')
self.assertEquals(
create_matchable_name('Surname Secondsurname, Name',
get_surname_words_length=True)[1], 2)
def test_m_names_cache(self, mocked_func, mocked_destroy):
'''
For this test we check whether a value is in the cache.
'''
def do_nothing():
'''
A function that does nothing. It substitutes the destroy_mnames_pids_cache,
so that we can actually take a snapshot of the cache for our test.
'''
pass
mocked_func.return_value = [9999]
mocked_destroy.side_effect = do_nothing()
rabbit([self.main_bibrec], verbose=True)
m_name = create_matchable_name(self.author_name)
self.assertTrue(invenio.bibauthorid_rabbit.M_NAME_PIDS_CACHE[m_name])
def rabbit(bibrecs=None,
check_invalid_papers=False,
personids_to_update_extids=None,
verbose=False):
logger = Logger("Rabbit")
if verbose:
logger.verbose = True
if not bibrecs:
logger.log("Running on all records")
else:
logger.log("Running on %s " % (str(bibrecs)))
populate_mnames_pids_cache()
global M_NAME_PIDS_CACHE
memoized_compare_names = memoized(comp_names)
compare_names = lambda x, y: memoized_compare_names(*sorted((x, y)))
def find_pids_by_matchable_name_with_cache(matchable_name):
try:
matched_pids = [M_NAME_PIDS_CACHE[matchable_name]]
except KeyError:
matched_pids = get_authors_by_name(matchable_name,
use_matchable_name=True)
if matched_pids:
M_NAME_PIDS_CACHE[matchable_name] = matched_pids[0]
return matched_pids
if USE_EXT_IDS:
def get_matched_pids_by_external_ids(sig, rec, pids_having_rec):
'''
This function returns all the matched pids after iterating
through all available external IDs of the system.
'''
for get_external_id_of_signature in external_id_getters:
external_id = get_external_id_of_signature(sig + (rec, ))
if external_id:
matched_pids = list(
get_author_by_external_id(external_id[0]))
if matched_pids and int(
matched_pids[0][0]) in pids_having_rec:
matched_pids = list()
return matched_pids
threshold = 0.8
if not bibrecs or check_invalid_papers:
all_bibrecs = get_all_valid_bibrecs()
if not bibrecs:
bibrecs = all_bibrecs
if check_invalid_papers:
filter_bibrecs_outside(all_bibrecs)
updated_pids = set()
deleted = frozenset(p[0] for p in get_deleted_papers())
bibrecs = list(bibrecs)
for idx, rec in enumerate(bibrecs):
logger.log("Considering %s" % str(rec))
if idx % 100 == 0:
task_update_progress("%d/%d current: %d" %
(idx, len(bibrecs), rec))
if idx % 1000 == 0:
destroy_partial_marc_caches()
populate_partial_marc_caches(bibrecs[idx:idx + 1000])
logger.log(
float(idx) / len(bibrecs), "%d/%d" % (idx, len(bibrecs)))
if rec in deleted:
remove_papers([rec])
continue
author_refs = get_author_refs_of_paper(rec)
coauthor_refs = get_coauthor_refs_of_paper(rec)
markrefs = frozenset(
chain(izip(cycle([100]), imap(itemgetter(0), author_refs)),
izip(cycle([700]), imap(itemgetter(0), coauthor_refs))))
personid_rows = [
map(int, row[:3]) + [row[4]]
for row in get_signatures_of_paper(rec)
]
personidrefs_names = dict(
((row[1], row[2]), row[3]) for row in personid_rows)
personidrefs = frozenset(personidrefs_names.keys())
new_signatures = list(markrefs - personidrefs)
old_signatures = list(personidrefs - markrefs)
new_signatures_names = dict(
(new, get_name_by_bibref(new)) for new in new_signatures)
# matrix |new_signatures| X |old_signatures|
matrix = [[
compare_names(new_signatures_names[new], personidrefs_names[old])
for old in old_signatures
] for new in new_signatures]
logger.log(" - Deleted signatures: %s" % str(old_signatures))
logger.log(" - Added signatures: %s" % str(new_signatures))
logger.log(" - Matrix: %s" % str(matrix))
#[new_signatures, old_signatures]
best_match = [(new_signatures[new], old_signatures[old])
for new, old, score in maximized_mapping(matrix)
if score > threshold]
logger.log(" - Best match: %s " % str(best_match))
for new, old in best_match:
logger.log(" - - Moving signature: %s on %s to %s as %s" %
(old, rec, new, new_signatures_names[new]))
modify_signature(old, rec, new, new_signatures_names[new])
remove_signatures(tuple(list(old) + [rec]) for old in old_signatures)
not_matched = frozenset(new_signatures) - frozenset(
map(itemgetter(0), best_match))
remaining_personid_rows = ([
x for x in personid_rows if x[1:3] in old_signatures
])
pids_having_rec = set([int(row[0]) for row in remaining_personid_rows])
logger.log(" - Not matched: %s" % str(not_matched))
if not_matched:
used_pids = set(r[0] for r in personid_rows)
for sig in not_matched:
name = new_signatures_names[sig]
matchable_name = create_matchable_name(name)
matched_pids = list()
if USE_EXT_IDS:
matched_pids = get_matched_pids_by_external_ids(
sig, rec, pids_having_rec)
if matched_pids:
add_signature(list(sig) + [rec],
name,
matched_pids[0][0],
m_name=matchable_name)
M_NAME_PIDS_CACHE[matchable_name] = matched_pids[0][0]
updated_pids.add(matched_pids[0][0])
pids_having_rec.add(matched_pids[0][0])
continue
matched_pids = find_pids_by_matchable_name_with_cache(
matchable_name)
if not matched_pids:
for matching_function in M_NAME_FUNCTIONS[1:]:
matchable_name = matching_function(name)
matched_pids = find_pids_by_matchable_name_with_cache(
matchable_name)
if matched_pids:
break
matched_pids = [p for p in matched_pids if int(p) not in used_pids]
best_matched_pid = None
for matched_pid in matched_pids:
# Because of the wrongly labeled data in the db, all
# of the possible choices have to be checked. If one of the
# coauthors, who had his signature already considered, claimed
# in the past one of the signatures of currently considered
# author, the algorithm will think that two signatures belong
# to the same person, and, will create an unnecessary new
# profile.
if not int(matched_pid) in pids_having_rec:
best_matched_pid = matched_pid
break
if not best_matched_pid:
new_pid = new_person_from_signature(
list(sig) + [rec], name, matchable_name)
M_NAME_PIDS_CACHE[matchable_name] = new_pid
used_pids.add(new_pid)
updated_pids.add(new_pid)
else:
add_signature(list(sig) + [rec],
name,
best_matched_pid,
m_name=matchable_name)
M_NAME_PIDS_CACHE[matchable_name] = best_matched_pid
used_pids.add(best_matched_pid)
updated_pids.add(best_matched_pid)
pids_having_rec.add(best_matched_pid)
logger.log('Finished with %s' % str(rec))
logger.update_status_final()
destroy_partial_marc_caches()
if personids_to_update_extids:
updated_pids |= set(personids_to_update_extids)
if updated_pids: # an empty set will update all canonical_names
update_canonical_names_of_authors(updated_pids)
update_external_ids_of_authors(
updated_pids,
limit_to_claimed_papers=bconfig.
LIMIT_EXTERNAL_IDS_COLLECTION_TO_CLAIMED_PAPERS,
force_cache_tables=True)
destroy_partial_marc_caches()
destroy_mnames_pids_cache()
remove_empty_authors()
task_update_progress("Done!")