class RegistrationProcessTest(IonIntegrationTestCase):
def setUp(self):
#print >> sys.stderr, "setup"
self._start_container()
#print >> sys.stderr, "start container"
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
#print >> sys.stderr, "deploy"
self.dataset_management = DatasetManagementServiceClient()
#print >> sys.stderr, "dataset management"
#setup registry process and patch in CFG
def init(self):
super(RegistrationProcess, self).__init__()
self.CFG = CFG
RegistrationProcess.__init__ = init
self.rp = RegistrationProcess()
self.rp.on_start()
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False), 'Host requires file-system access to coverage files, CEI mode does not support.')
def test_get_dataset_to_xml(self):
dataset_id = self._make_dataset()
coverage_path = DatasetManagementService()._get_coverage_path(dataset_id)
cov = SimplexCoverage.load(coverage_path)
xml_str = self.rp.get_dataset_xml(coverage_path)
dom = parseString(xml_str)
node = dom.getElementsByTagName('addAttributes')
metadata = node[0]
for n in metadata.childNodes:
if n.nodeType != 3:
if n.attributes["name"].value == "title":
self.assertEquals(cov.name, n.childNodes[0].nodeValue)
if n.attributes["name"].value == "institution":
self.assertEquals('OOI', n.childNodes[0].nodeValue)
if n.attributes["name"].value == "infoUrl":
self.assertEquals(self.rp.pydap_url+cov.name, n.childNodes[0].nodeValue)
parameters = []
node = dom.getElementsByTagName('sourceName')
for n in node:
if n.nodeType != 3:
parameters.append(str(n.childNodes[0].nodeValue))
cov_params = [key for key in cov.list_parameters()]
self.assertEquals(parameters, cov_params)
cov.close()
def _make_dataset(self):
tdom, sdom = time_series_domain()
sdom = sdom.dump()
tdom = tdom.dump()
parameter_dict_id = self.dataset_management.read_parameter_dictionary_by_name('ctd_parsed_param_dict', id_only=True)
dataset_id = self.dataset_management.create_dataset('test_dataset', parameter_dictionary_id=parameter_dict_id, spatial_domain=sdom, temporal_domain=tdom)
return dataset_id
def test_get_dataset_to_xml(self):
def init(self):
super(RegistrationProcess, self).__init__()
self.CFG = CFG
RegistrationProcess.__init__ = init
self.rp = RegistrationProcess()
self.rp.on_start()
dataset_id = self._make_dataset()
coverage_path = DatasetManagementService()._get_coverage_path(dataset_id)
cov = SimplexCoverage.load(coverage_path)
xml_str = self.rp.get_dataset_xml(coverage_path, 'product_id', 'product_name')
dom = parseString(xml_str)
node = dom.getElementsByTagName('addAttributes')
metadata = node[0]
for n in metadata.childNodes:
if n.nodeType != 3:
if n.attributes["name"].value == "title":
self.assertEquals('product_name', n.childNodes[0].nodeValue)
if n.attributes["name"].value == "institution":
self.assertEquals('OOI', n.childNodes[0].nodeValue)
if n.attributes["name"].value == "infoUrl":
self.assertEquals(self.rp.pydap_url+cov.name, n.childNodes[0].nodeValue)
parameters = []
node = dom.getElementsByTagName('sourceName')
for n in node:
if n.nodeType != 3:
parameters.append(str(n.childNodes[0].nodeValue))
cov_params = [key for key in cov.list_parameters()]
for p in parameters:
self.assertIn(p, cov_params)
cov.close()
def setUp(self):
#print >> sys.stderr, "setup"
self._start_container()
#print >> sys.stderr, "start container"
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
#print >> sys.stderr, "deploy"
self.dataset_management = DatasetManagementServiceClient()
#print >> sys.stderr, "dataset management"
#setup registry process and patch in CFG
def init(self):
super(RegistrationProcess, self).__init__()
self.CFG = CFG
RegistrationProcess.__init__ = init
self.rp = RegistrationProcess()
self.rp.on_start()
def test_get_dataset_to_xml(self):
def init(self):
super(RegistrationProcess, self).__init__()
self.CFG = CFG
RegistrationProcess.__init__ = init
self.rp = RegistrationProcess()
self.rp.on_start()
dataset_id = self._make_dataset()
coverage_path = DatasetManagementService()._get_coverage_path(
dataset_id)
cov = SimplexCoverage.load(coverage_path)
xml_str = self.rp.get_dataset_xml(coverage_path)
dom = parseString(xml_str)
node = dom.getElementsByTagName('addAttributes')
metadata = node[0]
for n in metadata.childNodes:
if n.nodeType != 3:
if n.attributes["name"].value == "title":
self.assertEquals(cov.name, n.childNodes[0].nodeValue)
if n.attributes["name"].value == "institution":
self.assertEquals('OOI', n.childNodes[0].nodeValue)
if n.attributes["name"].value == "infoUrl":
self.assertEquals(self.rp.pydap_url + cov.name,
n.childNodes[0].nodeValue)
parameters = []
node = dom.getElementsByTagName('sourceName')
for n in node:
if n.nodeType != 3:
parameters.append(str(n.childNodes[0].nodeValue))
cov_params = [key for key in cov.list_parameters()]
for p in parameters:
self.assertIn(p, cov_params)
cov.close()
def strap_erddap(self, data_product_id=None):
'''
Copies the datasets.xml to /tmp
'''
datasets_xml_path = RegistrationProcess.get_datasets_xml_path(CFG)
if os.path.lexists('/tmp/datasets.xml'):
os.unlink('/tmp/datasets.xml')
os.symlink(datasets_xml_path, '/tmp/datasets.xml')
if data_product_id:
with open('/tmp/erddap/flag/data%s' % data_product_id, 'a'):
pass
gevent.sleep(5)
from subprocess import call
call(['open', 'http://localhost:9000/erddap/tabledap/data%s.html' % data_product_id])
def strap_erddap(self, data_product_id=None):
"""
Copies the datasets.xml to /tmp
"""
datasets_xml_path = RegistrationProcess.get_datasets_xml_path(CFG)
if os.path.lexists("/tmp/datasets.xml"):
os.unlink("/tmp/datasets.xml")
os.symlink(datasets_xml_path, "/tmp/datasets.xml")
if data_product_id:
with open("/tmp/erddap/flag/data%s" % data_product_id, "a"):
pass
gevent.sleep(5)
from subprocess import call
call(["open", "http://localhost:9000/erddap/tabledap/data%s.html" % data_product_id])
def setUp(self):
#print >> sys.stderr, "setup"
self._start_container()
#print >> sys.stderr, "start container"
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
#print >> sys.stderr, "deploy"
self.dataset_management = DatasetManagementServiceClient()
#print >> sys.stderr, "dataset management"
#setup registry process and patch in CFG
def init(self):
super(RegistrationProcess, self).__init__()
self.CFG = CFG
RegistrationProcess.__init__ = init
self.rp = RegistrationProcess()
self.rp.on_start()
def strap_erddap(self, data_product_id=None, open_page=True):
'''
Copies the datasets.xml to /tmp
'''
datasets_xml_path = RegistrationProcess.get_datasets_xml_path(CFG)
if os.path.lexists('/tmp/datasets.xml'):
os.unlink('/tmp/datasets.xml')
os.symlink(datasets_xml_path, '/tmp/datasets.xml')
if data_product_id:
with open('/tmp/erddap/flag/data%s' % data_product_id, 'a'):
pass
if open_page:
gevent.sleep(5)
from subprocess import call
call(['open', 'http://localhost:9000/erddap/tabledap/data%s.html' % data_product_id])
def get_registration_handle(self):
# Get a handle on the registration worker
rp = RegistrationProcess()
rp.CFG = self.CFG
rp.container = self.container
return rp
def get_registration_handle(self):
# Get a handle on the registration worker
rp = RegistrationProcess()
rp.CFG = self.CFG
rp.container = self.container
return rp
class RegistrationProcessTest(IonIntegrationTestCase):
def setUp(self):
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
self.dataset_management = DatasetManagementServiceClient()
self.data_product_management = DataProductManagementServiceClient()
self.pubsub_management = PubsubManagementServiceClient()
self.resource_registry = self.container.resource_registry
@attr('LOCOINT')
@unittest.skipIf(os.getenv(
'CEI_LAUNCH_TEST', False
), 'Host requires file-system access to coverage files, CEI mode does not support.'
)
def test_get_dataset_to_xml(self):
def init(self):
super(RegistrationProcess, self).__init__()
self.CFG = CFG
RegistrationProcess.__init__ = init
self.rp = RegistrationProcess()
self.rp.on_start()
dataset_id = self._make_dataset()
coverage_path = DatasetManagementService()._get_coverage_path(
dataset_id)
cov = SimplexCoverage.load(coverage_path)
xml_str = self.rp.get_dataset_xml(coverage_path)
dom = parseString(xml_str)
node = dom.getElementsByTagName('addAttributes')
metadata = node[0]
for n in metadata.childNodes:
if n.nodeType != 3:
if n.attributes["name"].value == "title":
self.assertEquals(cov.name, n.childNodes[0].nodeValue)
if n.attributes["name"].value == "institution":
self.assertEquals('OOI', n.childNodes[0].nodeValue)
if n.attributes["name"].value == "infoUrl":
self.assertEquals(self.rp.pydap_url + cov.name,
n.childNodes[0].nodeValue)
parameters = []
node = dom.getElementsByTagName('sourceName')
for n in node:
if n.nodeType != 3:
parameters.append(str(n.childNodes[0].nodeValue))
cov_params = [key for key in cov.list_parameters()]
for p in parameters:
self.assertIn(p, cov_params)
cov.close()
def _make_dataset(self):
tdom, sdom = time_series_domain()
sdom = sdom.dump()
tdom = tdom.dump()
parameter_dict_id = self.dataset_management.read_parameter_dictionary_by_name(
'ctd_parsed_param_dict', id_only=True)
dataset_id = self.dataset_management.create_dataset(
'test_dataset',
parameter_dictionary_id=parameter_dict_id,
spatial_domain=sdom,
temporal_domain=tdom)
return dataset_id
def test_pydap(self):
if not CFG.get_safe('bootstrap.use_pydap', False):
raise unittest.SkipTest('PyDAP is off (bootstrap.use_pydap)')
ph = ParameterHelper(self.dataset_management, self.addCleanup)
pdict_id = ph.create_extended_parsed()
stream_def_id = self.pubsub_management.create_stream_definition(
'example', parameter_dictionary_id=pdict_id)
self.addCleanup(self.pubsub_management.delete_stream_definition,
stream_def_id)
tdom, sdom = time_series_domain()
dp = DataProduct(name='example')
dp.spatial_domain = sdom.dump()
dp.temporal_domain = tdom.dump()
data_product_id = self.data_product_management.create_data_product(
dp, stream_def_id)
self.addCleanup(self.data_product_management.delete_data_product,
data_product_id)
self.data_product_management.activate_data_product_persistence(
data_product_id)
self.addCleanup(
self.data_product_management.suspend_data_product_persistence,
data_product_id)
dataset_id = self.resource_registry.find_objects(data_product_id,
PRED.hasDataset,
id_only=True)[0][0]
monitor = DatasetMonitor(dataset_id)
self.addCleanup(monitor.stop)
rdt = ph.get_rdt(stream_def_id)
ph.fill_rdt(rdt, 10)
ph.publish_rdt_to_data_product(data_product_id, rdt)
self.assertTrue(monitor.event.wait(10))
gevent.sleep(
1) # Yield to other greenlets, had an issue with connectivity
pydap_host = CFG.get_safe('server.pydap.host', 'localhost')
pydap_port = CFG.get_safe('server.pydap.port', 8001)
url = 'http://%s:%s/%s' % (pydap_host, pydap_port, dataset_id)
for i in xrange(
3
): # Do it three times to test that the cache doesn't corrupt the requests/responses
ds = open_url(url)
np.testing.assert_array_equal(ds['time'][:], np.arange(10))
untested = []
for k, v in rdt.iteritems():
if k == rdt.temporal_parameter:
continue
context = rdt.context(k)
if isinstance(context.param_type, QuantityType):
np.testing.assert_array_equal(ds[k][k][:][0], rdt[k])
elif isinstance(context.param_type, ArrayType):
if context.param_type.inner_encoding is None:
values = np.empty(rdt[k].shape, dtype='O')
for i, obj in enumerate(rdt[k]):
values[i] = str(obj)
np.testing.assert_array_equal(ds[k][k][:][0], values)
elif len(rdt[k].shape) > 1:
values = np.empty(rdt[k].shape[0], dtype='O')
for i in xrange(rdt[k].shape[0]):
values[i] = ','.join(
map(lambda x: str(x), rdt[k][i].tolist()))
elif isinstance(context.param_type, ConstantType):
np.testing.assert_array_equal(ds[k][k][:][0], rdt[k])
elif isinstance(context.param_type, CategoryType):
np.testing.assert_array_equal(ds[k][k][:][0], rdt[k])
else:
untested.append('%s (%s)' % (k, context.param_type))
if untested:
raise AssertionError('Untested parameters: %s' % untested)
class RegistrationProcessTest(IonIntegrationTestCase):
def setUp(self):
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
self.dataset_management = DatasetManagementServiceClient()
self.data_product_management = DataProductManagementServiceClient()
self.pubsub_management = PubsubManagementServiceClient()
self.resource_registry = self.container.resource_registry
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False), 'Host requires file-system access to coverage files, CEI mode does not support.')
def test_get_dataset_to_xml(self):
def init(self):
super(RegistrationProcess, self).__init__()
self.CFG = CFG
RegistrationProcess.__init__ = init
self.rp = RegistrationProcess()
self.rp.on_start()
dataset_id = self._make_dataset()
coverage_path = DatasetManagementService()._get_coverage_path(dataset_id)
cov = SimplexCoverage.load(coverage_path)
xml_str = self.rp.get_dataset_xml(coverage_path, 'product_id', 'product_name')
dom = parseString(xml_str)
node = dom.getElementsByTagName('addAttributes')
metadata = node[0]
for n in metadata.childNodes:
if n.nodeType != 3:
if n.attributes["name"].value == "title":
self.assertEquals('product_name', n.childNodes[0].nodeValue)
if n.attributes["name"].value == "institution":
self.assertEquals('OOI', n.childNodes[0].nodeValue)
if n.attributes["name"].value == "infoUrl":
self.assertEquals(self.rp.pydap_url+cov.name, n.childNodes[0].nodeValue)
parameters = []
node = dom.getElementsByTagName('sourceName')
for n in node:
if n.nodeType != 3:
parameters.append(str(n.childNodes[0].nodeValue))
cov_params = [key for key in cov.list_parameters()]
for p in parameters:
self.assertIn(p, cov_params)
cov.close()
def _make_dataset(self):
tdom, sdom = time_series_domain()
sdom = sdom.dump()
tdom = tdom.dump()
parameter_dict_id = self.dataset_management.read_parameter_dictionary_by_name('ctd_parsed_param_dict', id_only=True)
dataset_id = self.dataset_management.create_dataset('test_dataset', parameter_dictionary_id=parameter_dict_id, spatial_domain=sdom, temporal_domain=tdom)
return dataset_id
def test_pydap(self):
if not CFG.get_safe('bootstrap.use_pydap',False):
raise unittest.SkipTest('PyDAP is off (bootstrap.use_pydap)')
ph = ParameterHelper(self.dataset_management, self.addCleanup)
pdict_id = ph.create_extended_parsed()
stream_def_id = self.pubsub_management.create_stream_definition('example', parameter_dictionary_id=pdict_id)
self.addCleanup(self.pubsub_management.delete_stream_definition, stream_def_id)
tdom, sdom = time_series_domain()
dp = DataProduct(name='example')
dp.spatial_domain = sdom.dump()
dp.temporal_domain = tdom.dump()
data_product_id = self.data_product_management.create_data_product(dp, stream_def_id)
self.addCleanup(self.data_product_management.delete_data_product, data_product_id)
self.data_product_management.activate_data_product_persistence(data_product_id)
self.addCleanup(self.data_product_management.suspend_data_product_persistence, data_product_id)
dataset_id = self.resource_registry.find_objects(data_product_id, PRED.hasDataset, id_only=True)[0][0]
monitor = DatasetMonitor(dataset_id)
self.addCleanup(monitor.stop)
rdt = ph.get_rdt(stream_def_id)
ph.fill_rdt(rdt,10)
ph.publish_rdt_to_data_product(data_product_id, rdt)
self.assertTrue(monitor.event.wait(10))
gevent.sleep(1) # Yield to other greenlets, had an issue with connectivity
pydap_host = CFG.get_safe('server.pydap.host','localhost')
pydap_port = CFG.get_safe('server.pydap.port',8001)
url = 'http://%s:%s/%s' %(pydap_host, pydap_port, dataset_id)
for i in xrange(3): # Do it three times to test that the cache doesn't corrupt the requests/responses
ds = open_url(url)
np.testing.assert_array_equal(ds['time'][:], np.arange(10))
untested = []
for k,v in rdt.iteritems():
if k==rdt.temporal_parameter:
continue
context = rdt.context(k)
if isinstance(context.param_type, QuantityType):
np.testing.assert_array_equal(ds[k][k][:][0], rdt[k])
elif isinstance(context.param_type, ArrayType):
if context.param_type.inner_encoding is None:
values = np.empty(rdt[k].shape, dtype='O')
for i,obj in enumerate(rdt[k]):
values[i] = str(obj)
np.testing.assert_array_equal(ds[k][k][:][0], values)
elif len(rdt[k].shape)>1:
values = np.empty(rdt[k].shape[0], dtype='O')
for i in xrange(rdt[k].shape[0]):
values[i] = ','.join(map(lambda x : str(x), rdt[k][i].tolist()))
elif isinstance(context.param_type, ConstantType):
np.testing.assert_array_equal(ds[k][k][:][0], rdt[k])
elif isinstance(context.param_type, CategoryType):
np.testing.assert_array_equal(ds[k][k][:][0], rdt[k])
else:
untested.append('%s (%s)' % (k,context.param_type))
if untested:
raise AssertionError('Untested parameters: %s' % untested)
class RegistrationProcessTest(IonIntegrationTestCase):
def setUp(self):
#print >> sys.stderr, "setup"
self._start_container()
#print >> sys.stderr, "start container"
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
#print >> sys.stderr, "deploy"
self.dataset_management = DatasetManagementServiceClient()
#print >> sys.stderr, "dataset management"
#setup registry process and patch in CFG
def init(self):
super(RegistrationProcess, self).__init__()
self.CFG = CFG
RegistrationProcess.__init__ = init
self.rp = RegistrationProcess()
self.rp.on_start()
@attr('LOCOINT')
@unittest.skipIf(os.getenv(
'CEI_LAUNCH_TEST', False
), 'Host requires file-system access to coverage files, CEI mode does not support.'
)
def test_get_dataset_to_xml(self):
dataset_id = self._make_dataset()
coverage_path = DatasetManagementService()._get_coverage_path(
dataset_id)
cov = SimplexCoverage.load(coverage_path)
xml_str = self.rp.get_dataset_xml(coverage_path)
dom = parseString(xml_str)
node = dom.getElementsByTagName('addAttributes')
metadata = node[0]
for n in metadata.childNodes:
if n.nodeType != 3:
if n.attributes["name"].value == "title":
self.assertEquals(cov.name, n.childNodes[0].nodeValue)
if n.attributes["name"].value == "institution":
self.assertEquals('OOI', n.childNodes[0].nodeValue)
if n.attributes["name"].value == "infoUrl":
self.assertEquals(self.rp.pydap_url + cov.name,
n.childNodes[0].nodeValue)
parameters = []
node = dom.getElementsByTagName('sourceName')
for n in node:
if n.nodeType != 3:
parameters.append(str(n.childNodes[0].nodeValue))
cov_params = [key for key in cov.list_parameters()]
self.assertEquals(parameters, cov_params)
cov.close()
def _make_dataset(self):
tdom, sdom = time_series_domain()
sdom = sdom.dump()
tdom = tdom.dump()
parameter_dict_id = self.dataset_management.read_parameter_dictionary_by_name(
'ctd_parsed_param_dict', id_only=True)
dataset_id = self.dataset_management.create_dataset(
'test_dataset',
parameter_dictionary_id=parameter_dict_id,
spatial_domain=sdom,
temporal_domain=tdom)
return dataset_id