def collect_pixel(self, pixel_num, k, j, i):
self.ccd_measure.interrupt_measurement_called = self.interrupt_measurement_called
IRMicroscopeBase2DScan.collect_pixel(self, pixel_num, k, j, i)
#calculate time remaining, there is almost 0.72 second overhead per pixel.
#sec_remaining = (self.Npixels-(pixel_num+1))*(self.app.hardware['winspec_remote_client'].settings['acq_time']+0.72)
#print(self.name, "collecting pixel: (",k,j,i, ") number:", pixel_num+1,"of",self.Npixels,
# 'estimated time remaining:',datetime.timedelta(seconds=sec_remaining) )
#acquire ccd data
counter = 0
retry = True
while (retry):
try:
counter += 1
hdr, data = self.ccd_measure.acquire_data(debug=False)
#1print(counter)
retry = False
except:
print('An error occurred while aquire_data(), try', counter,
'/4')
retry = True
finally:
if counter > 3:
retry = False
#self.measurement_sucessfully_completed = False
if hdr is None or data is None:
raise IOError("Failed to acquire Data (probably interrupted)")
self.hdr = hdr
self.data = data[0, 0, :]
if pixel_num == 0:
self.wls = self.ccd_measure.evaluate_wls_acton_spectrometer(
self.hdr, self.px_index)
intensity = self.data.sum()
self.display_image_map[k, j, i] = intensity
# save spectral data
if self.settings['save_h5']:
self.hyperspectral_map_h5[k, j, i, :] = self.data
self.integrated_count_map_h5[k, j, i] = intensity
if pixel_num == 0:
self.wls_h5[:] = self.wls
def collect_pixel(self, pixel_num, k, j, i):
IRMicroscopeBase2DScan.collect_pixel(self, pixel_num, k, j, i)
AndorHyperSpec2DScanBase.collect_pixel(self, pixel_num, k, j, i)
def collect_pixel(self, pixel_num, k, j, i):
IRMicroscopeBase2DScan.collect_pixel(self, pixel_num, k, j, i)
TRPL2DScanBase.collect_pixel(self, pixel_num, k, j, i)