def test_detect_graph_process_pooling(self):
with open(os.path.join(
test_utils.JSON_DATA_DIR, 'MTBLS1', 'MTBLS1.json')) as \
isajson_fp:
ISA = isajson.load(isajson_fp)
for study in ISA.studies:
utils.detect_graph_process_pooling(study.graph)
for assay in study.assays:
pooling_list = utils.detect_graph_process_pooling(
assay.graph)
self.assertListEqual(
sorted(pooling_list),
sorted(['#process/Extraction1', '#process/NMR_assay1']))
def test_detect_graph_process_pooling_batch_on_mtbls(self):
for i in range(1, 1):
try:
J = MTBLS.getj('MTBLS{}'.format(i))
ISA = isajson.load(StringIO(json.dumps(J)))
for study in ISA.studies:
utils.detect_graph_process_pooling(study.graph)
for assay in study.assays:
utils.detect_graph_process_pooling(assay.graph)
except IOError:
log.error('IO Error, skipping...')
except KeyError:
log.error('KeyError, skipping...')
except AttributeError:
log.error('AttributeError, skipping...')
except ValidationError:
log.error('jsonschema ValidationError, skipping...')