def extractImage(self):
"""Extract the raw image data"""
import os
from ctypes import cdll, c_char_p
extract_csk = cdll.LoadLibrary(os.path.dirname(__file__)+'/csk.so')
# Prepare and run the C-based extractor
#check if the input is a string. if so put it into one element list
if(isinstance(self.hdf5FileList,str)):
self.hdf5FileList = [self.hdf5FileList]
for i in range(len(self.hdf5FileList)):
#need to create a new instance every time
self.frame = Frame()
self.frame.configure()
appendStr = '_' + str(i)
# if more than one file to contatenate that create different outputs
# but suffixing _i
if(len(self.hdf5FileList) == 1):
appendStr = ''
outputNow = self.output + appendStr
self.hdf5 = self.hdf5FileList[i]
inFile_c = c_char_p(bytes(self.hdf5,'utf-8'))
outFile_c = c_char_p(bytes(outputNow,'utf-8'))
extract_csk.extract_csk(inFile_c,outFile_c)
# Now, populate the metadata
try:
fp = h5py.File(self.hdf5,'r')
except Exception as strerror:
self.logger.error("IOError: %s\n" % strerror)
return
self.populateMetadata(file=fp)
self.populateImage(outputNow)
self._populateExtras(fp)
fp.close()
self.frameList.append(self.frame)
createAuxFile(self.frame,outputNow + '.aux')
self._imageFileList = self.hdf5FileList
return tkfunc(self)
def extractImage(self):
"""Extract the raw image data"""
self.parse()
self._populateExtras()
self.populateImage()
createAuxFile(self.frame, self.rawFile + '.aux')