def surface_normals(r,phi,theta,grid,gtype='spher'):
"""
Numerically compute surface normals of a grid (in absence of analytical alternative).
Also computes the surface elements, making L{surface_elements} obsolete.
"""
if gtype=='spher':
raise NotImplementedError
elif gtype=='delaunay':
raise NotImplementedError
elif gtype=='triangular':
#-- compute the angle between the surface normal and the radius vector
x,y,z = vectors.spher2cart_coord(r,phi,theta)
centers = np.zeros((len(grid.convex_hull),3))
normals = np.zeros((len(grid.convex_hull),3))
sizes = np.zeros(len(grid.convex_hull))
#vertx,verty,vertz = points.T
#-- compute centers,normals and sizes
for i,indices in enumerate(grid.convex_hull):
#-- center is triangle's barycenter
centers[i] = [x[indices].sum()/3,y[indices].sum()/3,z[indices].sum()/3]
#-- size is size of triangle
a = sqrt((x[indices[0]]-x[indices[1]])**2 + (y[indices[0]]-y[indices[1]])**2 + (z[indices[0]]-z[indices[1]])**2)
b = sqrt((x[indices[0]]-x[indices[2]])**2 + (y[indices[0]]-y[indices[2]])**2 + (z[indices[0]]-z[indices[2]])**2)
c = sqrt((x[indices[1]]-x[indices[2]])**2 + (y[indices[1]]-y[indices[2]])**2 + (z[indices[1]]-z[indices[2]])**2)
s = 0.5*(a+b+c)
sizes[i] = sqrt( s*(s-a)*(s-b)*(s-c))
#-- normal is cross product of two sides
side1 = [x[indices[1]]-x[indices[0]],y[indices[1]]-y[indices[0]],z[indices[1]]-z[indices[0]]]
side2 = [x[indices[2]]-x[indices[0]],y[indices[2]]-y[indices[0]],z[indices[2]]-z[indices[0]]]
normals[i] = np.cross(side1,side2)
#-- make sure the normal is pointed outwards
normal_r,normal_phi,normal_theta = vectors.cart2spher(centers.T,normals.T)
normal_r = np.abs(normal_r)
centers_sph = vectors.cart2spher_coord(*centers.T)
normals = np.array(vectors.spher2cart(centers_sph,(normal_r,normal_phi,normal_theta)))
#-- normalise and compute angles
normals_T = normals.T
normals = normals_T / vectors.norm(normals_T)
#cos_gamma = vectors.cos_angle(a,normals)
print centers.shape,sizes.shape,normals.shape
return centers, sizes, normals#, cos_gamma
def fastrot_roche_surface_gravity(r, theta, phi, r_pole, omega, M, norm=False):
"""
Calculate components of the local surface gravity of the fast rotating
Roche model.
Input units are solar units.
Output units are SI.
Omega is fraction of critical velocity.
See Cranmer & Owocki, Apj (1995)
@param r: radius of the surface element to calculate the surface gravity
@type r: float/ndarray
@param theta: colatitude of surface element
@type theta: float/ndarray
@param phi: longitude of surface element
@type phi: float/ndarray
@param r_pole: polar radius of model
@type r_pole: float
@param omega: fraction of critical rotation velocity
@type omega: float
@param M: mass of the star
@type M: float
@param norm: compute magnitude of surface gravity (True) or vector (False)
@type norm: boolean
@return: surface gravity magnitude or vector
@rtype: 3Xfloat/3Xndarray
"""
GG = constants.GG_sol
#-- calculate r-component of local gravity
x = r / r_pole
grav_r = GG * M / r_pole**2 * (-1. / x**2 +
8. / 27. * x * omega**2 * sin(theta)**2)
#-- calculate theta-component of local gravity
grav_th = GG * M / r_pole**2 * (8. / 27. * x * omega**2 * sin(theta) *
cos(theta))
grav = np.array([grav_r, grav_th])
#-- now we transform to spherical coordinates
grav = np.array(vectors.spher2cart((r, phi, theta),
(grav[0], 0., grav[1])))
grav = grav * constants.Rsol
if norm:
return vectors.norm(grav)
else:
return grav
def projected_intensity(teff,gravity,areas,line_of_sight,photband='OPEN.BOL'):
"""
Compute projected intensity in the line of sight.
gravity is vector directed inwards in the star
line of sight is vector.
"""
ones = np.ones_like(gravity[0])
losx = line_of_sight[0]*ones
losy = line_of_sight[1]*ones
losz = line_of_sight[2]*ones
angles = vectors.angle(-gravity,np.array([losx,losy,losz]))
mus = cos(angles)
grav_ = vectors.norm(gravity)
#-- intensity is less if we look at the limb
intens = intensity(teff,grav_,mu=mus,photband=photband)
#-- intensity is less if the surface element area is small (it does not need
# to be projected anymore!)
return intens*areas*mus,mus
def fastrot_roche_surface_gravity(r,theta,phi,r_pole,omega,M,norm=False):
"""
Calculate components of the local surface gravity of the fast rotating
Roche model.
Input units are solar units.
Output units are SI.
Omega is fraction of critical velocity.
See Cranmer & Owocki, Apj (1995)
@param r: radius of the surface element to calculate the surface gravity
@type r: float/ndarray
@param theta: colatitude of surface element
@type theta: float/ndarray
@param phi: longitude of surface element
@type phi: float/ndarray
@param r_pole: polar radius of model
@type r_pole: float
@param omega: fraction of critical rotation velocity
@type omega: float
@param M: mass of the star
@type M: float
@param norm: compute magnitude of surface gravity (True) or vector (False)
@type norm: boolean
@return: surface gravity magnitude or vector
@rtype: 3Xfloat/3Xndarray
"""
GG = constants.GG_sol
#-- calculate r-component of local gravity
x = r/r_pole
grav_r = GG*M/r_pole**2 * (-1./x**2 + 8./27.*x*omega**2*sin(theta)**2)
#-- calculate theta-component of local gravity
grav_th = GG*M/r_pole**2 * (8./27.*x*omega**2*sin(theta)*cos(theta))
grav = np.array([grav_r,grav_th])
#-- now we transform to spherical coordinates
grav = np.array(vectors.spher2cart( (r,phi,theta),(grav[0],0.,grav[1]) ))
grav = grav*constants.Rsol
if norm:
return vectors.norm(grav)
else:
return grav
def projected_intensity(teff,
gravity,
areas,
line_of_sight,
photband='OPEN.BOL'):
"""
Compute projected intensity in the line of sight.
gravity is vector directed inwards in the star
line of sight is vector.
"""
ones = np.ones_like(gravity[0])
losx = line_of_sight[0] * ones
losy = line_of_sight[1] * ones
losz = line_of_sight[2] * ones
angles = vectors.angle(-gravity, np.array([losx, losy, losz]))
mus = cos(angles)
grav_ = vectors.norm(gravity)
#-- intensity is less if we look at the limb
intens = intensity(teff, grav_, mu=mus, photband=photband)
#-- intensity is less if the surface element area is small (it does not need
# to be projected anymore!)
return intens * areas * mus, mus
def diffrot_roche_surface_gravity(r,theta,phi,r_pole,M,omega_eq,omega_pole,norm=False):
"""
Surface gravity from differentially rotation Roche potential.
Magnitude is OK, please carefully check direction.
@param r: radius of the surface element to calculate the surface gravity
@type r: float/ndarray
@param theta: colatitude of surface element
@type theta: float/ndarray
@param phi: longitude of surface element
@type phi: float/ndarray
@param r_pole: polar radius of model
@type r_pole: float
@param M: mass of the star
@type M: float
@param omega_eq: fraction of critical rotation velocity at equator
@type omega_eq: float
@param omega_pole: fraction of critical rotation velocity at pole
@type omega_pole: float
@param norm: compute magnitude of surface gravity (True) or vector (False)
@type norm: boolean
@return: surface gravity magnitude or vector
@rtype: 3Xfloat/3Xndarray
"""
GG = constants.GG_sol
Omega_crit = sqrt(8*GG*M/ (27*r_pole**3))
omega_eq = omega_eq*Omega_crit
omega_pole = omega_pole*Omega_crit
x = omega_eq / omega_pole
#-- find R_equator solving a cubic equation:
a = omega_eq**2/(GG*M)
X = (x**2+x+1)/(6*x**2)
b,c = -1./(a*X*r_pole), +1./(a*X)
m,k = 27*c+0*1j,-3*b+0*1j
n = m**2-4*k**3 + 0*1j
om1 = -0.5 + 0.5*sqrt(3)*1j
om2 = -0.5 - 0.5*sqrt(3)*1j
c1 = (0.5*(m+sqrt(n)))**(1./3.)
c2 = (0.5*(m-sqrt(n)))**(1./3.)
x1 = -1./3. * ( c1 + c2 )
x2 = -1./3. * ( om2*c1 + om1*c2 )
x3 = -1./3. * ( om1*c1 + om2*c2 )
re = x2.real
# ratio of centrifugal to gravitational force at the equator
f = re**3 * omega_eq**2 / (GG*M)
# ratio Re/Rp
rat = 1 + (f*(x**2+x+1))/(6.*x**2)
# some coefficients for easy evaluation
alpha = f*(x-1)**2/(6*x**2)*(1/rat)**7
beta = f*(x-1) /(2*x**2)*(1/rat)**5
gamma = f /(2*x**2)*(1/rat)**3
# implicit equation for the surface
sinth = sin(theta)
y = r/r_pole
grav_th = (6*alpha*y**7*sinth**5 + 4*beta*y**5*sinth**3 + 2*gamma*y**3*sinth)*cos(theta)
grav_r = 7*alpha/r_pole*y**6*sinth**6 + 5*beta/r_pole*y**4*sinth**4 + 3*gamma/r_pole*y**2*sinth**2 - 1./r_pole
fr = 6*alpha*y**7*sinth**4 + 4*beta*y**5*sinth**2 + 2*gamma*y**3
magn = GG*M/r**2 * sqrt(cos(theta)**2 + (1-fr)**2 *sin(theta)**2)
magn_fake = np.sqrt(grav_r**2+(grav_th/r)**2)
grav_r,grav_th = grav_r/magn_fake*magn,(grav_th/r)/magn_fake*magn
grav = np.array([grav_r*constants.Rsol,grav_th*constants.Rsol])
#-- now we transform to spherical coordinates
grav = vectors.spher2cart( (r,phi,theta),(grav[0],0.,grav[1]) )
if norm:
return vectors.norm(grav)
else:
return grav
def surface_normals(r, phi, theta, grid, gtype='spher'):
"""
Numerically compute surface normals of a grid (in absence of analytical alternative).
Also computes the surface elements, making L{surface_elements} obsolete.
"""
if gtype == 'spher':
raise NotImplementedError
elif gtype == 'delaunay':
raise NotImplementedError
elif gtype == 'triangular':
#-- compute the angle between the surface normal and the radius vector
x, y, z = vectors.spher2cart_coord(r, phi, theta)
centers = np.zeros((len(grid.convex_hull), 3))
normals = np.zeros((len(grid.convex_hull), 3))
sizes = np.zeros(len(grid.convex_hull))
#vertx,verty,vertz = points.T
#-- compute centers,normals and sizes
for i, indices in enumerate(grid.convex_hull):
#-- center is triangle's barycenter
centers[i] = [
x[indices].sum() / 3, y[indices].sum() / 3,
z[indices].sum() / 3
]
#-- size is size of triangle
a = sqrt((x[indices[0]] - x[indices[1]])**2 +
(y[indices[0]] - y[indices[1]])**2 +
(z[indices[0]] - z[indices[1]])**2)
b = sqrt((x[indices[0]] - x[indices[2]])**2 +
(y[indices[0]] - y[indices[2]])**2 +
(z[indices[0]] - z[indices[2]])**2)
c = sqrt((x[indices[1]] - x[indices[2]])**2 +
(y[indices[1]] - y[indices[2]])**2 +
(z[indices[1]] - z[indices[2]])**2)
s = 0.5 * (a + b + c)
sizes[i] = sqrt(s * (s - a) * (s - b) * (s - c))
#-- normal is cross product of two sides
side1 = [
x[indices[1]] - x[indices[0]], y[indices[1]] - y[indices[0]],
z[indices[1]] - z[indices[0]]
]
side2 = [
x[indices[2]] - x[indices[0]], y[indices[2]] - y[indices[0]],
z[indices[2]] - z[indices[0]]
]
normals[i] = np.cross(side1, side2)
#-- make sure the normal is pointed outwards
normal_r, normal_phi, normal_theta = vectors.cart2spher(
centers.T, normals.T)
normal_r = np.abs(normal_r)
centers_sph = vectors.cart2spher_coord(*centers.T)
normals = np.array(
vectors.spher2cart(centers_sph,
(normal_r, normal_phi, normal_theta)))
#-- normalise and compute angles
normals_T = normals.T
normals = normals_T / vectors.norm(normals_T)
#cos_gamma = vectors.cos_angle(a,normals)
print(centers.shape, sizes.shape, normals.shape)
return centers, sizes, normals #, cos_gamma
def diffrot_roche_surface_gravity(r,theta,phi,r_pole,M,omega_eq,omega_pole,norm=False):
"""
Surface gravity from differentially rotation Roche potential.
Magnitude is OK, please carefully check direction.
@param r: radius of the surface element to calculate the surface gravity
@type r: float/ndarray
@param theta: colatitude of surface element
@type theta: float/ndarray
@param phi: longitude of surface element
@type phi: float/ndarray
@param r_pole: polar radius of model
@type r_pole: float
@param M: mass of the star
@type M: float
@param omega_eq: fraction of critical rotation velocity at equator
@type omega_eq: float
@param omega_pole: fraction of critical rotation velocity at pole
@type omega_pole: float
@param norm: compute magnitude of surface gravity (True) or vector (False)
@type norm: boolean
@return: surface gravity magnitude or vector
@rtype: 3Xfloat/3Xndarray
"""
GG = constants.GG_sol
Omega_crit = sqrt(8*GG*M/ (27*r_pole**3))
omega_eq = omega_eq*Omega_crit
omega_pole = omega_pole*Omega_crit
x = omega_eq / omega_pole
#-- find R_equator solving a cubic equation:
a = omega_eq**2/(GG*M)
X = (x**2+x+1)/(6*x**2)
b,c = -1./(a*X*r_pole), +1./(a*X)
m,k = 27*c+0*1j,-3*b+0*1j
n = m**2-4*k**3 + 0*1j
om1 = -0.5 + 0.5*sqrt(3)*1j
om2 = -0.5 - 0.5*sqrt(3)*1j
c1 = (0.5*(m+sqrt(n)))**(1./3.)
c2 = (0.5*(m-sqrt(n)))**(1./3.)
x1 = -1./3. * ( c1 + c2 )
x2 = -1./3. * ( om2*c1 + om1*c2 )
x3 = -1./3. * ( om1*c1 + om2*c2 )
re = x2.real
# ratio of centrifugal to gravitational force at the equator
f = re**3 * omega_eq**2 / (GG*M)
# ratio Re/Rp
rat = 1 + (f*(x**2+x+1))/(6.*x**2)
# some coefficients for easy evaluation
alpha = f*(x-1)**2/(6*x**2)*(1/rat)**7
beta = f*(x-1) /(2*x**2)*(1/rat)**5
gamma = f /(2*x**2)*(1/rat)**3
# implicit equation for the surface
sinth = sin(theta)
y = r/r_pole
grav_th = (6*alpha*y**7*sinth**5 + 4*beta*y**5*sinth**3 + 2*gamma*y**3*sinth)*cos(theta)
grav_r = 7*alpha/r_pole*y**6*sinth**6 + 5*beta/r_pole*y**4*sinth**4 + 3*gamma/r_pole*y**2*sinth**2 - 1./r_pole
fr = 6*alpha*y**7*sinth**4 + 4*beta*y**5*sinth**2 + 2*gamma*y**3
magn = GG*M/r**2 * sqrt(cos(theta)**2 + (1-fr)**2 *sin(theta)**2)
magn_fake = np.sqrt(grav_r**2+(grav_th/r)**2)
grav_r,grav_th = grav_r/magn_fake*magn,(grav_th/r)/magn_fake*magn
grav = np.array([grav_r*constants.Rsol,grav_th*constants.Rsol])
#-- now we transform to spherical coordinates
grav = vectors.spher2cart( (r,phi,theta),(grav[0],0.,grav[1]) )
if norm:
return vectors.norm(grav)
else:
return grav
