def readUnsignedBytes(path, dimensions, header=0):
""" Read a file as an ArrayImg of UnsignedShortType """
ra = RandomAccessFile(path, 'r')
try:
if header < 0:
# Interpret from the end: useful for files with variable header lengths
# such as some types of uncompressed TIFF formats
header = ra.length() + header
ra.skipBytes(header)
bytes = zeros(reduce(operator.mul, dimensions), 'b')
ra.read(bytes)
return ArrayImgs.unsignedBytes(bytes, dimensions)
finally:
ra.close()
def readFloats(path, dimensions, header=0, byte_order=ByteOrder.LITTLE_ENDIAN):
""" Read a file as an ArrayImg of FloatType """
size = reduce(operator.mul, dimensions)
ra = RandomAccessFile(path, 'r')
try:
if header < 0:
# Interpret from the end: useful for files with variable header lengths
# such as some types of uncompressed TIFF formats
header = ra.length() + header
ra.skipBytes(header)
bytes = zeros(size * 4, 'b')
ra.read(bytes)
floats = zeros(size, 'f')
ByteBuffer.wrap(bytes).order(byte_order).asFloatBuffer().get(floats)
return ArrayImgs.floats(floats, dimensions)
finally:
ra.close()
def readUnsignedShorts(path, dimensions, header=0, return_array=False, byte_order=ByteOrder.LITTLE_ENDIAN):
""" Read a file as an ArrayImg of UnsignedShortType """
size = reduce(operator.mul, dimensions)
ra = RandomAccessFile(path, 'r')
try:
if header < 0:
# Interpret from the end: useful for files with variable header lengths
# such as some types of uncompressed TIFF formats
header = ra.length() + header
ra.skipBytes(header)
bytes = zeros(size * 2, 'b')
ra.read(bytes)
shorts = zeros(size, 'h') # h is for short
ByteBuffer.wrap(bytes).order(byte_order).asShortBuffer().get(shorts)
return shorts if return_array else ArrayImgs.unsignedShorts(shorts, dimensions)
finally:
ra.close()
