def setUpClass(cls):
token = environ.get('KB_AUTH_TOKEN', None)
user_id = requests.post(
'https://kbase.us/services/authorization/Sessions/Login',
data='token={}&fields=user_id'.format(token)).json()['user_id']
# WARNING: don't call any logging methods on the context object,
# it'll result in a NoneType error
cls.ctx = MethodContext(None)
cls.ctx.update({'token': token,
'user_id': user_id,
'provenance': [
{'service': 'jgi_gateway',
'method': 'please_never_use_it_in_production',
'method_params': []
}],
'authenticated': 1})
config_file = environ.get('KB_DEPLOYMENT_CONFIG', None)
cls.cfg = {}
config = ConfigParser()
config.read(config_file)
for nameval in config.items('jgi_gateway'):
cls.cfg[nameval[0]] = nameval[1]
cls.wsURL = cls.cfg['workspace-url']
cls.wsClient = workspaceService(cls.wsURL)
cls.serviceImpl = jgi_gateway(cls.cfg)
cls.scratch = cls.cfg['scratch']
cls.callback_url = os.environ['SDK_CALLBACK_URL']
def setUpClass(cls):
token = environ.get('KB_AUTH_TOKEN', None)
if not isinstance(token, str):
raise(ValueError('invalid or missing token'))
header = {'Authorization': token}
endpoint = 'https://ci.kbase.us/services/auth/api/V2/token'
result = requests.get(endpoint, headers=header).json()
user_id = result['user']
# WARNING: don't call any logging methods on the context object,
# it'll result in a NoneType error
cls.ctx = MethodContext(None)
cls.ctx.update({'token': token,
'user_id': user_id,
'provenance': [
{'service': 'jgi_gateway',
'method': 'please_never_use_it_in_production',
'method_params': []
}],
'authenticated': 1})
config_file = environ.get('KB_DEPLOYMENT_CONFIG', None)
cls.cfg = {}
config = ConfigParser()
config.read(config_file)
for nameval in config.items('jgi_gateway'):
cls.cfg[nameval[0]] = nameval[1]
cls.wsURL = cls.cfg['workspace-url']
cls.wsClient = workspaceService(cls.wsURL)
# context = ServerContext()
cls.serviceImpl = jgi_gateway(cls.cfg)
cls.scratch = cls.cfg['scratch']
cls.callback_url = os.environ['SDK_CALLBACK_URL']
def setUpClass(cls):
token = environ.get('KB_AUTH_TOKEN', None)
if not isinstance(token, str):
raise ValueError
config_file = environ.get('KB_DEPLOYMENT_CONFIG', None)
cls.cfg = {}
config = ConfigParser()
config.read(config_file)
for nameval in config.items('jgi_gateway'):
cls.cfg[nameval[0]] = nameval[1]
# Getting username from Auth profile for token
authServiceUrl = cls.cfg['auth-service-url']
auth_client = _KBaseAuth(authServiceUrl)
user_id = auth_client.get_user(token)
# WARNING: don't call any logging methods on the context object,
# it'll result in a NoneType error
cls.ctx = MethodContext(None)
cls.ctx.update({
'token':
token,
'user_id':
user_id,
'provenance': [{
'service': 'jgi_gateway',
'method': 'please_never_use_it_in_production',
'method_params': []
}],
'authenticated':
1
})
cls.wsURL = cls.cfg['workspace-url']
cls.wsClient = workspaceService(cls.wsURL)
# context = ServerContext()
cls.serviceImpl = jgi_gateway(cls.cfg)
cls.scratch = cls.cfg['scratch']
cls.callback_url = os.environ['SDK_CALLBACK_URL']
print('starting to build local mongoDB')
os.system("sudo service mongodb start")
os.system("mongod --version")
os.system("cat /var/log/mongodb/mongodb.log "
"| grep 'waiting for connections on port 27017'")
def get_config():
if not get_config_file():
return None
retconfig = {}
config = ConfigParser()
config.read(get_config_file())
for nameval in config.items(get_service_name() or 'jgi_gateway'):
retconfig[nameval[0]] = nameval[1]
return retconfig
config = get_config()
from jgi_gateway.jgi_gatewayImpl import jgi_gateway # noqa @IgnorePep8
impl_jgi_gateway = jgi_gateway(config)
class JSONObjectEncoder(json.JSONEncoder):
def default(self, obj):
if isinstance(obj, set):
return list(obj)
if isinstance(obj, frozenset):
return list(obj)
if hasattr(obj, 'toJSONable'):
return obj.toJSONable()
return json.JSONEncoder.default(self, obj)
class JSONRPCServiceCustom(JSONRPCService):
def call(self, ctx, jsondata):