class FileTypeSummary(AzulJsonObject):
format = StringProperty()
fileSource = ListProperty() # List could have string(s) and/or None
count = IntegerProperty()
totalSize = FloatProperty()
matrixCellCount = FloatProperty()
isIntermediate = BooleanProperty()
contentDescription = ListProperty(
) # List could have string(s) and/or None
@classmethod
def for_bucket(cls, bucket: JSON) -> 'FileTypeSummary':
self = cls()
self.count = bucket['doc_count']
self.totalSize = bucket['size_by_type']['value']
self.matrixCellCount = bucket['matrix_cell_count_by_type']['value']
self.format = bucket['key']
return self
@classmethod
def for_aggregate(cls, aggregate_file: JSON) -> 'FileTypeSummary':
self = cls()
self.count = aggregate_file['count']
self.fileSource = aggregate_file['file_source']
self.totalSize = aggregate_file['size']
self.matrixCellCount = aggregate_file['matrix_cell_count']
self.format = aggregate_file['file_format']
self.isIntermediate = aggregate_file['is_intermediate']
self.contentDescription = aggregate_file['content_description']
assert isinstance(self.format, str), type(str)
assert self.format
return self
class FileIdAutoCompleteEntry(JsonObject):
_id = StringProperty(name='id')
dataType = StringProperty()
donorId = ListProperty(StringProperty)
fileBundleId = StringProperty()
fileName = ListProperty(StringProperty)
projectCode = ListProperty(StringProperty)
_type = StringProperty(name='type', default='file')
class SummaryRepresentation(JsonObject):
projectCount = IntegerProperty()
specimenCount = IntegerProperty()
speciesCount = IntegerProperty()
fileCount = IntegerProperty()
totalFileSize = FloatProperty()
donorCount = IntegerProperty()
labCount = IntegerProperty()
totalCellCount = FloatProperty()
organTypes = ListProperty(StringProperty(required=False))
fileTypeSummaries = ListProperty(FileTypeSummary)
cellCountSummaries = ListProperty(OrganCellCountSummary)
class ResumableIteratorState(JsonObject):
doc_type = "ResumableIteratorState"
_id = StringProperty()
name = StringProperty()
timestamp = DateTimeProperty()
args = ListProperty()
kwargs = DictProperty()
retry = DictProperty()
progress = DictProperty()
complete = BooleanProperty(default=False)
class ResumableIteratorState(JsonObject):
doc_type = "ResumableIteratorState"
_id = StringProperty()
name = StringProperty()
timestamp = DateTimeProperty()
args = ListProperty()
kwargs = DictProperty()
progress = DictProperty()
def is_resume(self):
return bool(getattr(self, '_rev', None))
class OrganCellCountSummary(JsonObject):
organType = ListProperty(
) # List could have strings and/or None (eg. ['Brain', 'Skin', None])
countOfDocsWithOrganType = IntegerProperty()
totalCellCountByOrgan = FloatProperty()
@classmethod
def for_bucket(cls, bucket: JSON) -> 'OrganCellCountSummary':
self = cls()
self.organType = [bucket['key']]
self.countOfDocsWithOrganType = bucket['doc_count']
self.totalCellCountByOrgan = bucket['cell_count']['value']
return self
class ConcatenateStrings(JsonObject):
type = TypeProperty('concatenate_strings')
expressions = ListProperty(required=True)
separator = StringProperty(required=True)
def configure(self, expressions):
self._expression_fns = expressions
def __call__(self, item, context=None):
return self.separator.join([
six.text_type(expression(item, context))
for expression in self._expression_fns
if expression(item, context)
])
class FacetObj(JsonObject):
terms = ListProperty(AbstractTermObj)
total = IntegerProperty()
_type = StringProperty(name='type')
class AutoCompleteRepresentation(JsonObject):
hits = ListProperty()
pagination = ObjectProperty(PaginationObj,
exclude_if_none=True,
default=None)
class ApiResponse(JsonObject):
hits = ListProperty(HitEntry)
pagination = ObjectProperty(PaginationObj,
exclude_if_none=True,
default=None)