def neo4j_upload_wrapper( inputs: List[str], input_format: str, input_compression: str, uri: str, username: str, password: str, stream: bool, node_filters: Tuple[str, str], edge_filters: Tuple[str, str], ): """ Upload a set of nodes/edges to a Neo4j database. \f Parameters ---------- inputs: List[str] A list of files that contains nodes/edges input_format: str The input format input_compression: str The input compression type uri: str The full HTTP address for Neo4j database username: str Username for authentication password: str Password for authentication stream: bool Whether to parse input as a stream node_filters: Tuple[str, str] Node filters edge_filters: Tuple[str, str] Edge filters """ try: neo4j_upload( inputs, input_format, input_compression, uri, username, password, stream, node_filters, edge_filters, ) exit(0) except Exception as nue: get_logger().error(f"kgx.neo4j_upload error: {str(nue)}") exit(1)
def test_neo4j_download(clean_slate): """ Test download from Neo4j. """ inputs = [ os.path.join(RESOURCE_DIR, 'graph_nodes.tsv'), os.path.join(RESOURCE_DIR, 'graph_edges.tsv'), ] output = os.path.join(TARGET_DIR, 'neo_download') # upload t1 = neo4j_upload( inputs=inputs, input_format='tsv', input_compression=None, uri=DEFAULT_NEO4J_URL, username=DEFAULT_NEO4J_USERNAME, password=DEFAULT_NEO4J_PASSWORD, stream=False, ) t2 = neo4j_download( uri=DEFAULT_NEO4J_URL, username=DEFAULT_NEO4J_USERNAME, password=DEFAULT_NEO4J_PASSWORD, output=output, output_format='tsv', output_compression=None, stream=False, ) assert os.path.exists(f"{output}_nodes.tsv") assert os.path.exists(f"{output}_edges.tsv") assert t1.store.graph.number_of_nodes() == t2.store.graph.number_of_nodes() assert t1.store.graph.number_of_edges() == t2.store.graph.number_of_edges()
def test_neo4j_download(clean_database): """ Test download from Neo4j. """ inputs = [ os.path.join(RESOURCE_DIR, "graph_nodes.tsv"), os.path.join(RESOURCE_DIR, "graph_edges.tsv"), ] output = os.path.join(TARGET_DIR, "neo_download") # upload t1 = neo4j_upload( inputs=inputs, input_format="tsv", input_compression=None, uri=DEFAULT_NEO4J_URL, username=DEFAULT_NEO4J_USERNAME, password=DEFAULT_NEO4J_PASSWORD, stream=False, ) t2 = neo4j_download( uri=DEFAULT_NEO4J_URL, username=DEFAULT_NEO4J_USERNAME, password=DEFAULT_NEO4J_PASSWORD, output=output, output_format="", output_compression=None, stream=False, ) assert os.path.exists(f"{output}_nodes.tsv")
def test_neo4j_upload(clean_slate): """ Test upload to Neo4j. """ inputs = [ os.path.join(RESOURCE_DIR, 'graph_nodes.tsv'), os.path.join(RESOURCE_DIR, 'graph_edges.tsv'), ] # upload t = neo4j_upload( inputs, 'tsv', None, uri=DEFAULT_NEO4J_URL, username=DEFAULT_NEO4J_USERNAME, password=DEFAULT_NEO4J_PASSWORD, stream=False, ) assert t.store.graph.number_of_nodes() == 512 assert t.store.graph.number_of_edges() == 532