def run(self):
"""Runs the model indefinitely. To control the
simulations, model must have been initialized
with proper Queues."""
if not base.is_allocated():
self.reset()
while True:
for _ in xrange(50000):
proclist.do_kmc_step()
if self.autosend and not self.image_queue.full():
atoms = self.get_atoms()
# attach other quantities need to plot
# to the atoms object and let it travel
# piggy-back through the queue
atoms.size = self.size
self.image_queue.put(atoms)
if not self.signal_queue.empty():
signal = self.signal_queue.get()
if signal.upper() == 'STOP':
self.deallocate()
break
elif signal.upper() == 'PAUSE':
print('starting pause')
elif signal.upper() == 'RESET_TIME':
base.set_kmc_time(0.0)
elif signal.upper() == 'START':
pass
elif signal.upper() == 'ATOMS':
self.image_queue.put(self.get_atoms())
elif signal.upper() == 'DOUBLE':
self.double()
elif signal.upper() == 'HALVE':
self.halve()
elif signal.upper() == 'SWITCH_SURFACE_PROCESSES_OFF':
self.switch_surface_processes_off()
elif signal.upper() == 'SWITCH_SURFACE_PROCESSES_ON':
self.switch_surface_processes_on()
elif signal.upper() == 'TERMINATE':
self.deallocate()
self.terminate()
elif signal.upper() == 'JOIN':
self.join()
if not self.parameter_queue.empty():
while not self.parameter_queue.empty():
parameters = self.parameter_queue.get()
settings.parameters.update(parameters)
set_rate_constants(parameters, self.print_rates)
def run(self):
"""Runs the model indefinitely. To control the
simulations, model must have been initialized
with proper Queues."""
if not base.is_allocated():
self.reset()
while True:
for _ in xrange(50000):
proclist.do_kmc_step()
if self.autosend and not self.image_queue.full():
atoms = self.get_atoms()
# attach other quantities need to plot
# to the atoms object and let it travel
# piggy-back through the queue
atoms.size = self.size
self.image_queue.put(atoms)
if not self.signal_queue.empty():
signal = self.signal_queue.get()
if signal.upper() == 'STOP':
self.deallocate()
break
elif signal.upper() == 'PAUSE':
print('starting pause')
elif signal.upper() == 'RESET_TIME':
base.set_kmc_time(0.0)
elif signal.upper() == 'START':
pass
elif signal.upper() == 'ATOMS':
self.image_queue.put(self.get_atoms())
elif signal.upper() == 'DOUBLE':
self.double()
elif signal.upper() == 'HALVE':
self.halve()
elif signal.upper() == 'SWITCH_SURFACE_PROCESSES_OFF':
self.switch_surface_processes_off()
elif signal.upper() == 'SWITCH_SURFACE_PROCESSES_ON':
self.switch_surface_processes_on()
elif signal.upper() == 'TERMINATE':
self.deallocate()
self.terminate()
elif signal.upper() == 'JOIN':
self.join()
if not self.parameter_queue.empty():
while not self.parameter_queue.empty():
parameters = self.parameter_queue.get()
settings.parameters.update(parameters)
set_rate_constants(parameters, self.print_rates)
def do_steps(self, n=10000):
"""Propagate the model `n` steps."""
for _ in xrange(n):
proclist.do_kmc_step()
def do_steps(self, n=10000):
"""Propagate the model `n` steps."""
for _ in xrange(n):
proclist.do_kmc_step()
