record, ncbi_names_table, synonymy_table, authority_file, hacks, hacks_data_location, unresolvable_taxonomy_list, keeplist_taxonomy_list, taxa_mappings_list, tax_log_handle, tax_log_html_handle) # tn = name[0] an = name[1] an_flat = krbionames.flatten_organism_name(an, ' ') record.annotations['organism_old'] = record.annotations['organism'] record.annotations['organism'] = an_flat record.annotations['source'] = an_flat record.description = record.description.replace(record.annotations['organism'], '') record.description = record.description.strip() krcl.show_cursor() ######### krseqsearch.__tax_log_close(tax_log_handle) krseqsearch.__tax_log_html_close(tax_log_html_handle) krbioio.write_sequence_file(records, output_file, 'gb')