Example #1
0
class DbKyoto(object):
    def __init__(self, db_file):
        #from train import TAG2ID, WORD2ID#, BAYES_RANK
        #self.ider = WORD2ID
        self.db = DB()
        self.db_file = db_file
        print path.join(KYOTO_DB_PATH, self.db_file)
        if not self.db.open(path.join(KYOTO_DB_PATH, self.db_file),
                            DB.OWRITER | DB.OCREATE):
            print >> sys.stderr, "open error: " + str(self.db.error())

    def set(self, entry):
        key = entry[0]
        result_array = convert2array(entry[1]).tostring()
        if not self.db.set(key, result_array):
            print key
            print result_array
            print >> sys.stderr, "open error: " + str(self.db.error())

    def get(self, key):
        value = self.db.get(key)
        if value:
            result = array('L')
            result.fromstring(value)
            return convert2dict(result)
        else:
            #print >>sys.stderr, self.ider.get_word_by_id(key)
            #print key
            #print >>sys.stderr, "%s error: "%key + str(self.db.error())
            pass
Example #2
0
def aggregate_by_hour(db_file):
    # Initialize the dict with each hour
    hours = {key: 0 for key in range(0,24)}
    db = DB()

    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database."

    cur = db.cursor()
    cur.jump_back()

    while True:
        rec = cur.get(False)
        if not rec:
            break

        loaded = loads(rec[1])
        unix = float(loaded['created_at'])
        time = datetime.fromtimestamp(unix)

        hours[time.hour] = hours[time.hour] + 1

        cur.step_back()
    cur.disable()
    db.close()

    hours = [{'name': "{}:00".format(key), 'data': [hours[key]]} for key in hours]
    return hours
Example #3
0
class DbKyoto(object):
    def __init__(self, db_file):
        #from train import TAG2ID, WORD2ID#, BAYES_RANK
        #self.ider = WORD2ID
        self.db = DB()
        self.db_file = db_file
        print path.join(KYOTO_DB_PATH,self.db_file)
        if not self.db.open(path.join(KYOTO_DB_PATH,self.db_file), DB.OWRITER | DB.OCREATE):
            print >>sys.stderr, "open error: " + str(self.db.error())

    def set(self,entry):
        key = entry[0]
        result_array = convert2array(entry[1]).tostring()
        if not self.db.set(key,result_array):
            print key
            print result_array
            print >>sys.stderr, "open error: " + str(self.db.error())

    def get(self,key):
        value = self.db.get(key)
        if value:
            result = array('L')
            result.fromstring(value)
            return convert2dict(result)
        else:
            #print >>sys.stderr, self.ider.get_word_by_id(key)
            #print key
            #print >>sys.stderr, "%s error: "%key + str(self.db.error())
            pass
Example #4
0
def get_items(item_filter, db_file, page=0):
    item_iter = 0
    items = []
    db = DB()
    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database."

    cur = db.cursor()
    cur.jump_back()
    while len(items) < FILTER_MAX:
        rec = cur.get(False)
        if not rec:
            break

        if item_iter != (FILTER_MAX * page):
            if item_filter(rec):
                item_iter = item_iter + 1
            cur.step_back()
            continue

        if item_filter(rec):
            items.append(rec)

        cur.step_back()
    cur.disable()
    db.close()

    sorted_items = sorted(items, key=get_key, reverse=True)
    sorted_items_for_viewing = [loads(item[1]) for item in sorted_items]
    for item in sorted_items_for_viewing:
        if item['title'] is None or item['title'] == "":
            item['title'] = item['url']
    return sorted_items_for_viewing
Example #5
0
def get_post_num(post_num, db_file):
    item = None
    db = DB()
    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database."

    cur = db.cursor()
    cur.jump()
    i = 0
    while True:
        rec = cur.get(False)
        if not rec:
            break

        if i == post_num:
            item = rec

        cur.step()
        i = i + 1

    cur.disable()
    db.close()

    if item is not None:
        return loads(item[1])
    return dict()
Example #6
0
 def startup(self):
   ''' Open the index.
   '''
   # pylint: disable=import-error,import-outside-toplevel
   from kyotocabinet import DB
   self._kyoto = DB()
   self._kyoto.open(self.path, DB.OWRITER | DB.OCREATE)
Example #7
0
    def init_write(self):
        self.mode = "write"

        if self.ext == ".csv":
            self._data_file = open(self.filename, "wb")
            self._writer = csv.writer(self._data_file)
            if self.headers:
                self._writer.writerow(self.headers)

        elif self.ext == ".json":
            self._storage = {}

        elif self.ext == ".kch":
            from kyotocabinet import DB
            self._storage = DB()
            if not self._storage.open(self.filename, DB.OWRITER | DB.OCREATE):
                msg = "Error opening kyotocabinet db: %s" % (
                    self._storage.error())
                raise dexy.exceptions.UserFeedback(msg)

        elif self.ext == ".sqlite3":
            self.init_write_sqlite3()

        else:
            raise dexy.exceptions.UserFeedback("unsupported extension %s" %
                                               self.ext)
Example #8
0
 def open_db(self, name):
     db = DB()
     db.open(
         join(self.path, "%s.kch"%name),
         DB.OWRITER | DB.OCREATE
     )
     self.opendb.append(db)
     return db
    def open(self, filename):
        db = DB()

        # self.db=DB(DB.GEXCEPTIONAL)
        if not db.open(filename, DB.OWRITER | DB.OCREATE | DB.ONOLOCK):
            raise IOError("open error: '" + str(self.db.error()) + "' on file:"
                          + filename)
        return db
Example #10
0
 def __init__(self, db_file):
     #from train import TAG2ID, WORD2ID#, BAYES_RANK
     #self.ider = WORD2ID
     self.db = DB()
     self.db_file = db_file
     print path.join(KYOTO_DB_PATH, self.db_file)
     if not self.db.open(path.join(KYOTO_DB_PATH, self.db_file),
                         DB.OWRITER | DB.OCREATE):
         print >> sys.stderr, "open error: " + str(self.db.error())
Example #11
0
 def __init__(self, dbpath, readonly=False):
     self.readonly = readonly
     mode = KDB.OREADER if readonly else KDB.OREADER | KDB.OWRITER | KDB.OCREATE
     db = KDB()
     if not db.open(dbpath, mode):
         raise IOError("kyotocabinet.DB().open(%s, %o): %s" %
                       (dbpath, mode, db.error()))
     self.db = db
     self.dbpath = dbpath
Example #12
0
def top_things(db_file):
    urls = {}
    people = {}
    graph = {}

    db = DB()

    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database. (Top things)"

    cur = db.cursor()
    cur.jump_back()
    while True:
        rec = cur.get(False)
        if not rec:
            break

        loaded_rec = loads(rec[1])
        split = get_domain(loaded_rec)

        if urls.get(split, False) == False:
            urls[split] = 1
        else:
            urls[split] = urls[split] + 1

        person = loaded_rec['person']
        if people.get(person, False) == False:
            people[person] = 1
        else:
            people[person] = people[person] + 1

        if split is not None and split is not "" and \
            person is not None and person is not "":
            # Build a crazy relational graph out of my nosql data
            if graph.get(split, False) == False:
                graph[split] = {"is_person": False, "data": [person], "linked_to_count": 1}
            elif person not in graph[split]:
                graph[split]["data"].append(person)
                graph[split]["linked_to_count"] = graph[split]["linked_to_count"] + 1

            if graph.get(person, False) == False:
                graph[person] = {"is_person": True, "data": [split]}
            elif split not in graph[person]:
                graph[person]["data"].append(split)

        cur.step_back()
    cur.disable()
    db.close()

    def get_one(x):
        return x[1]

    return (sorted(urls.items(), key=get_one, reverse=True),
            sorted(people.items(), key=get_one, reverse=True),
            graph)
Example #13
0
def get_post_by_date(key, db_file):
    item = None
    db = DB()
    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database."
    item = db.get(key)

    db.close()
    if item is not None:
        return loads(item)
    return dict()
Example #14
0
 def __init__(self, path):
     # create the database object
     self._path = path
     self._db = DB()
     # open the database
     if not self._db.open(path, DB.OREADER | DB.OWRITER | DB.OCREATE):
         raise GrapheekDataKyotoCabinetInitFailureException(
             str(self._db.error()))
     super(KyotoCabinetGraph, self).__init__()
     self._ensure_prepared()
     self._closed = False
Example #15
0
 def dbOpen(name):
     db = DB()
     if self.create:
         # if not db.open(abspath(self.path) + '/' + name + ".kch",
         #         DB.OWRITER | DB.OCREATE | DB.OAUTOSYNC | DB.OAUTOTRAN):
         if not db.open(abspath(self.path) + "/" + name + ".kch", DB.OWRITER | DB.OCREATE):
             raise IOError("open error: " + str(db.error()))
         return db
     else:
         # if not db.open(abspath(self.path) + '/' + name + ".kch",
         #         DB.OWRITER | DB.OAUTOSYNC | DB.OAUTOTRAN):
         if not db.open(abspath(self.path) + "/" + name + ".kch", DB.OWRITER):
             raise IOError("open error: " + str(db.error()))
         return db
Example #16
0
def main():
    db = DB()
    if not db.open("bayes.kch", DB.OWRITER | DB.OCREATE):
        return

    with open("word_tf.txt") as word_tf:
        for line in word_tf:
            line = line.strip()
            word, bayes_list = loads(line)
            print word
            if bayes_list:
                ar = array('I')
                ar.fromlist(lineiter(bayes_list))
                db[word] = ar.tostring()
Example #17
0
def main():
    db = DB()
    if not db.open("bayes.kch", DB.OWRITER | DB.OCREATE):
        return

    with open("word_tf.txt") as word_tf:
        for line in word_tf:
            line = line.strip()
            word, bayes_list = loads(line)
            print word
            if bayes_list:
                ar = array('I')
                ar.fromlist(lineiter(bayes_list))
                db[word] = ar.tostring()
def __load_blast_data(blast):
    # Connect to kyoto db
    db = DB()
    if not db.open("/opt/gene2accession/gene2accession.kch", DB.OREADER):
        raise Exception("Could not load gene2accession.kch: " + str(db.error()))

    hits = {}
    gi_num = re.compile('gi\|([0-9]+)')
    for line in blast:
        split_line = line.split('\t')

        # Important data
        evalue = float(split_line[10])

        gi_nums = gi_num.findall(split_line[12])
        genome_ids = [db.get(x) for x in gi_nums if db.get(x) is not None]

        # Thanks to Peter's parser, the gi list and org list are the same
        # length (the first gi column is also the first gi in the "master" gi
        # column)
        for org in genome_ids:
            if org in hits:
                hits[org].append(evalue)
            else:
                hits[org] = [evalue]
    db.close()
    return hits
 def dbOpen(name):
     db = DB()
     dbpathname = abspath(self.path) + '/' + name + ".kch"
     if self.create:
         # if not db.open(abspath(self.path) + '/' + name + ".kch", 
         #         DB.OWRITER | DB.OCREATE | DB.OAUTOSYNC | DB.OAUTOTRAN):
         if not db.open(dbpathname, DB.OWRITER | DB.OCREATE):
             raise IOError("open error: %s %s" % (dbpathname, str(db.error())))  #pragma: NO COVER
         return db
     else:
         # if not db.open(abspath(self.path) + '/' + name + ".kch", 
         #         DB.OWRITER | DB.OAUTOSYNC | DB.OAUTOTRAN):
         if not db.open(dbpathname, DB.OWRITER):  #pragma: NO COVER
             raise IOError("open error: %s %s" % (dbpathname, str(db.error())))  #pragma: NO COVER
         return db
Example #20
0
def purge(domain, genid):
    if request.remote_addr not in settings.ALLOW:
        return text_response("Not permitted.\n", 403)

    db = DB()

    if not db.open(settings.GENID_DATABASE, DB.OWRITER | DB.OCREATE):
        return text_response("Failed to purge: cannot open database.\n", 501)

    set_ok = db.set(domain, genid)
    db.close()

    if not set_ok:
        return text_response("Failed to purge: cannot set genid.\n", 501)
    else:
        return text_response("Purged <%s>\n" % (domain,))
  def __enter__( self ):

    if self._mode == "r":
      with open( self._fn, "rb" ) as f:
        state = pickle_load( f );
        self._len_c = state[ "c" ];
        self._len_b = state[ "b" ];
        self._len_x = state[ "x" ];
        self._lenrow = self._len_c + self._len_b + self._len_x;
        self._ic = state[ "ic" ];
        self._icbp = state[ "icbp" ];

    if self._mode == "w":

      with NamedTemporaryFile() as tmpfn:
        self._kdbfn = tmpfn.name + '.kch';
      self._kdb = KDB();
      try:
        assert self._kdb.open( self._kdbfn, KDB.OWRITER | KDB.OCREATE );
      except:
        print( str( self._kdb.error() ) );
        raise;

      with TemporaryDirectory() as tmpdirname:
        self._ldbdn = tmpdirname;
      self._ldb = LDB( self._ldbdn, create_if_missing=True );

    return self;
Example #22
0
    def init_write(self):
        self.mode = "write"

        if self.ext == ".csv":
            self._data_file = open(self.filename, "wb")
            self._writer = csv.writer(self._data_file)
            if self.headers:
                self._writer.writerow(self.headers)

        elif self.ext == ".json":
            self._storage = {}

        elif self.ext == ".kch":
            from kyotocabinet import DB

            self._storage = DB()
            if not self._storage.open(self.filename, DB.OWRITER | DB.OCREATE):
                msg = "Error opening kyotocabinet db: %s" % (self._storage.error())
                raise dexy.commands.UserFeedback(msg)

        elif self.ext == ".sqlite3":
            self.init_write_sqlite3()

        else:
            raise dexy.commands.UserFeedback("unsupported extension %s" % self.ext)
Example #23
0
def insert_item(url, person, db_file, submitted_title=''):
    mimetype = "application/json"
    db = DB()

    if not db.open("{0}".format(db_file), DB.OWRITER | DB.OCREATE):

        response = {}
        response[
            'What happened?'] = "Couldn't open the damn database. Error: {0}".format(
                db.error())
        return Response(dumps(response), mimetype=mimetype)

    if is_url_in_db(db, url):
        return Response('{"What happened?": "Someone '\
            'tried to submit a duplicate URL."}',
            mimetype=mimetype)

    title = url
    summary = "~?~"
    try:
        thing = urlopen(url, timeout=10)
        soup = BeautifulSoup(thing)
        title = soup.title.string

        # Do some dumb summarizing if we can
        def concat(a, v):
            return a + " " + v.strip()

        visible_stuff = filter(visible, soup.findAll(text=True))
        summary = reduce(concat, visible_stuff, "")[:900] + "..."
    except:
        pass
        #return Response('{"What happened?": '\
        #    'I dunno bs4 messed up somehow."}',
        #    mimetype=mimetype)

    created_at = int(mktime(datetime.now().utctimetuple()))

    is_image = url.lower().endswith(("jpg", "jpeg", "gif", "png"))
    thumbnail = gen_thumbnail_for_url(url, str(created_at))

    record = {
        "created_at": created_at,
        "title": title,
        "url": url,
        "person": person,
        "summary": summary,
        "person_color": PERSON_COLORS[random.randint(0,
                                                     len(PERSON_COLORS) - 1)],
        "is_image": is_image,
        "thumbnail": thumbnail,
        "comment": submitted_title
    }
    db.set(created_at, dumps(record))
    db.close()

    return Response('{"What happened?": "MUDADA"}', mimetype=mimetype)
  def __enter__( self ):

    self._cdata = DB();
    self._ddata = DB();

    try:
      if self._mode == "r":
        assert self._cdata.open( self._fn_cdata, DB.OREADER );
      elif self._mode == "w":
        if isfile( self._fn_cdata ):
          remove( self._fn_cdata );
        assert self._cdata.open( self._fn_cdata, DB.OWRITER | DB.OCREATE );
      else:
        assert False;
    except:
      if self._cdata is not None:
        print( str( self._cdata.error() ) );
      raise;

    try:
      if self._mode == "r":
        assert self._ddata.open( self._fn_ddata, DB.OREADER );
      elif self._mode == "w":
        if isfile( self._fn_ddata ):
          remove( self._fn_ddata );
        assert self._ddata.open( self._fn_ddata, DB.OWRITER | DB.OCREATE );
      else:
        assert False;
    except:
      if self._ddata is not None:
        print( str( self._ddata.error() ) );
      raise;

    if self._mode == "r":

      with open( self._fn_meta, 'rb' ) as f:
        r = pickle_load( f );
        self._len_c = r[ "c" ];
        self._len_b = r[ "b" ];
        self._len_x = r[ "x" ];
        self._co = r[ "co" ];

      with open( self._fn_icov, 'rb' ) as f:
        self._icov = pickle_load( f );

    return self;
Example #25
0
 def __init__(self, db_file):
     #from train import TAG2ID, WORD2ID#, BAYES_RANK
     #self.ider = WORD2ID
     self.db = DB()
     self.db_file = db_file
     print path.join(KYOTO_DB_PATH,self.db_file)
     if not self.db.open(path.join(KYOTO_DB_PATH,self.db_file), DB.OWRITER | DB.OCREATE):
         print >>sys.stderr, "open error: " + str(self.db.error())
Example #26
0
class DbKyoto(object):
    def __init__(self, db_file):
        self.db = DB()
        self.db_file = db_file
        if not self.db.open(db_file, DB.OWRITER | DB.OCREATE):
            print >> sys.stderr, 'open error: ' + str(self.db.error())

    def set(self, txt, po_id):
        feature_list = feature_md5(txt)
        for feature in feature_list:
            key = feature
            entry = self.get(key)
            if not entry:
                val = array('L', [po_id])
                if not self.db.set(key, val.tostring()):
                    print >> sys.stderr, 'open error: ' + str(self.db.error())
            else:
                val = array('L')
                val.fromstring(entry)
                if po_id not in val:
                    val.append(po_id)
                    self.db.set(key, val.tostring())
                return val

    def get(self, key):
        po_id = self.db.get(key)
        result = array('L')
        if po_id:
            result.fromstring(po_id)
        return result
Example #27
0
class DbKyoto(object):
    def __init__(self, db_file):
        self.db = DB()
        self.db_file = db_file
        if not self.db.open(db_file, DB.OWRITER | DB.OCREATE):
            print >> sys.stderr, 'open error: ' + str(self.db.error())

    def set(self, txt, po_id):
        feature_list = feature_md5(txt)
        for feature in feature_list:
            key = feature
            entry = self.get(key)
            if not entry:
                val = array('L', [po_id])
                if not self.db.set(key, val.tostring()):
                    print >> sys.stderr, 'open error: ' + str(self.db.error())
            else:
                val = array('L')
                val.fromstring(entry)
                if po_id not in val:
                    val.append(po_id)
                    self.db.set(key, val.tostring())
                return val

    def get(self, key):
        po_id = self.db.get(key)
        result = array('L')
        if po_id:
            result.fromstring(po_id)
        return result
Example #28
0
File: cache.py Project: l0rb/og_api
 def __init__(self, dir, subdirs=[]):
     dir += "_zlib"
     if dir not in dbList:
         dbList[dir] = DB()
         dbList[dir].open(
             dir + ".kch#ops=c#log=" + dir +
             ".log#logkinds=debu#zcomp=zlib", DB.OWRITER | DB.OCREATE)
     self.db = dbList[dir]
     self.key = "/".join(subdirs)
Example #29
0
def get_items_last_X_days(db_file, X, munge=True):
    dates = {}
    db = DB()
    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database."

    X_days_ago = datetime.now() - timedelta(days=X)

    cur = db.cursor()
    cur.jump_back()
    while True:
        rec = cur.get(False)
        if not rec:
            break

        loaded = loads(rec[1])
        unix = float(loaded['created_at'])
        time = datetime.fromtimestamp(unix)

        if time > X_days_ago:
            if munge:
                date_obj = date(year=time.year, month=time.month, day=time.day)
            else:
                date_obj = time
            # Javascript expects Date.UTC to spit out dates of a certain
            # length.
            day_unix = int(mktime(date_obj.timetuple()))*1000
            if dates.get(day_unix, False) == False:
                dates[day_unix] = {loaded["person"]: 1}
            else:
                relevant_dict = dates[day_unix]

                if relevant_dict.get(loaded["person"], False) == False:
                    relevant_dict[loaded["person"]] = 1
                else:
                    relevant_dict[loaded["person"]] = relevant_dict[loaded["person"]] + 1
        else:
            break;

        cur.step_back()
    cur.disable()
    db.close()

    return dates
Example #30
0
def get_last_items(db_file, pages=1):
    items = []
    db = DB()
    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database."

    cur = db.cursor()
    cur.jump_back()
    while len(items) < (pages * FILTER_MAX):
        rec = cur.get(False)
        if not rec:
            break

        items.append(rec)
        cur.step_back()
    cur.disable()
    db.close()

    return items
Example #31
0
    def init_read(self):
        self.mode = "read"

        if self.ext == ".csv":
            self._file = open(self.filename, "rb")
        elif self.ext == ".json":
            with open(self.filename, "rb") as f:
                self._storage = json.load(f)
        elif self.ext == ".kch":
            from kyotocabinet import DB
            self._storage = DB()
            self._storage.open(self.filename, DB.OREADER)
        elif self.ext == ".sqlite3":
            import sqlite3
            self._storage = sqlite3.connect(self.filename)
            self._cursor = self._storage.cursor()
        else:
            raise dexy.exceptions.UserFeedback("unsupported extension %s" %
                                               self.ext)
Example #32
0
def get_all_items(db_file):
    items = []
    db = DB()
    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database."

    cur = db.cursor()
    cur.jump()
    while True:
        rec = cur.get(False)
        if not rec:
            break
        items.append(rec)
        cur.step()

    cur.disable()
    db.close()

    sorted_items_for_viewing = [loads(item[1]) for item in items]
    return sorted_items_for_viewing
Example #33
0
    def decorated_function(*args, **kwargs):
        # Debug
        if not current_app.config['CACHE']:
            return f(*args, **kwargs)

        db = DB()
        db.open("/tmp/page_cache.kch")
        res = None
        fancy = hash("{}{}{}".format(db_meta_info()['count'], request.url, f.func_name))

        res = db.get(fancy)
        if not res:
            res = f(*args, **kwargs)
            db.set(fancy, res)

        db.close()
        return res
Example #34
0
def get_items(item_filter, db_file, page=0):
    item_iter = 0
    items = []
    db = DB()
    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database."

    cur = db.cursor()
    cur.jump_back()
    while len(items) < FILTER_MAX:
        rec = cur.get(False)
        if not rec:
            break

        if item_iter != (FILTER_MAX * page):
            if item_filter(rec):
                item_iter = item_iter + 1
            cur.step_back()
            continue

        if item_filter(rec):
            items.append(rec)

        cur.step_back()
    cur.disable()
    db.close()

    sorted_items = sorted(items, key=get_key, reverse=True)
    sorted_items_for_viewing = [loads(item[1]) for item in sorted_items]
    for item in sorted_items_for_viewing:
        if item['title'] is None or item['title'] == "":
            item['title'] = item['url']
    return sorted_items_for_viewing
Example #35
0
def get_post_num(post_num, db_file):
    item = None
    db = DB()
    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database."

    cur = db.cursor()
    cur.jump()
    i = 0
    while True:
        rec = cur.get(False)
        if not rec:
            break

        if i == post_num:
            item = rec

        cur.step()
        i = i + 1

    cur.disable()
    db.close()

    if item is not None:
        return loads(item[1])
    return dict()
Example #36
0
def aggregate_by_hour(db_file):
    # Initialize the dict with each hour
    hours = {key: 0 for key in range(0, 24)}
    db = DB()

    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database."

    cur = db.cursor()
    cur.jump_back()

    while True:
        rec = cur.get(False)
        if not rec:
            break

        loaded = loads(rec[1])
        unix = float(loaded['created_at'])
        time = datetime.fromtimestamp(unix)

        hours[time.hour] = hours[time.hour] + 1

        cur.step_back()
    cur.disable()
    db.close()

    hours = [{
        'name': "{}:00".format(key),
        'data': [hours[key]]
    } for key in hours]
    return hours
def db_meta_info():
    meta = {}
    db = DB()
    db_file = current_app.config['DB_FILE']
    if not db.open("{0}".format(db_file), DB.OREADER):
        print "Could not open database (meta info)."
    meta["size"] = db.size()
    meta["count"] = db.count()
    db.close()

    return meta
Example #38
0
def gen_thumbnails(db_file):
    db = DB()
    if not db.open("{0}".format(db_file), DB.OREADER | DB.OWRITER):
        sys.exit(1)

    cur = db.cursor()
    cur.jump_back()
    while True:
        rec = cur.get(False)

        if not rec:
            break

        loaded = loads(rec[1])
        is_image = loaded["url"].lower().endswith(("jpg", "jpeg", "gif", "png"))

        if is_image:
            print "Thumbnailing {}".format(loaded["url"])
            loaded["is_image"] = True
            try:
                thumbnail = gen_thumbnail_for_url(loaded["url"], rec[0])
            except IOError as e:
                print "IOError: {}".format(e)
                print "Save result: {}".format(cur.set_value(dumps(loaded)))
                cur.step_back()
                continue


            if thumbnail:
                loaded["thumbnail"] = thumbnail
                print "Thumbnailed {}".format(loaded["url"])
                print "Save result: {}".format(cur.set_value(dumps(loaded)))

        cur.step_back()

    cur.disable()
    db.close()

    return True
Example #39
0
    def __init__(self, path, truncate=False):
        """
        Open a new connection to a database using the Kyoto Cabinet engine.

        Args:
            * path (str): Path to database.

        Kwargs:
            * truncate (bool, False): If database should be truncated before opening.
        """
        self.db = DB()
        self.batchsize = 1000
        self.batch = {}
        dbparams = '.kct#apow=0#bnum=10000000#msiz=' + str(2 << 30)
        if truncate:
            result = self.db.open(path + dbparams,
                                  DB.OWRITER | DB.OCREATE | DB.OTRUNCATE)
        else:
            result = self.db.open(path + dbparams, DB.OWRITER)
        if not result:
            raise PathError('DNA outdb open error: %s ' % self.db.error())
            exit(1)
Example #40
0
def top_things(db_file):
    urls = {}
    people = {}
    graph = {}

    db = DB()

    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database. (Top things)"

    cur = db.cursor()
    cur.jump_back()
    while True:
        rec = cur.get(False)
        if not rec:
            break

        loaded_rec = loads(rec[1])
        split = get_domain(loaded_rec)

        if urls.get(split, False) == False:
            urls[split] = 1
        else:
            urls[split] = urls[split] + 1

        person = loaded_rec['person']
        if people.get(person, False) == False:
            people[person] = 1
        else:
            people[person] = people[person] + 1

        if split is not None and split is not "" and \
            person is not None and person is not "":
            # Build a crazy relational graph out of my nosql data
            if graph.get(split, False) == False:
                graph[split] = {
                    "is_person": False,
                    "data": [person],
                    "linked_to_count": 1
                }
            elif person not in graph[split]:
                graph[split]["data"].append(person)
                graph[split][
                    "linked_to_count"] = graph[split]["linked_to_count"] + 1

            if graph.get(person, False) == False:
                graph[person] = {"is_person": True, "data": [split]}
            elif split not in graph[person]:
                graph[person]["data"].append(split)

        cur.step_back()
    cur.disable()
    db.close()

    def get_one(x):
        return x[1]

    return (sorted(urls.items(), key=get_one, reverse=True),
            sorted(people.items(), key=get_one, reverse=True), graph)
Example #41
0
def get_items_on_page(page, db_file):
    item_iter = 0
    items = []
    db = DB()
    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database."

    cur = db.cursor()
    cur.jump_back()
    while len(items) < FILTER_MAX:
        rec = cur.get(False)
        if not rec:
            break

        if item_iter >= (FILTER_MAX * page):
            items.append(rec)

        item_iter = item_iter + 1
        cur.step_back()
    cur.disable()
    db.close()

    return items
Example #42
0
def insert_item(url, person, db_file, submitted_title=''):
    mimetype = "application/json"
    db = DB()

    if not db.open("{0}".format(db_file),
        DB.OWRITER | DB.OCREATE):

        response = {}
        response['What happened?'] = "Couldn't open the damn database. Error: {0}".format(db.error())
        return Response(dumps(response), mimetype=mimetype)

    if is_url_in_db(db, url):
        return Response('{"What happened?": "Someone '\
            'tried to submit a duplicate URL."}',
            mimetype=mimetype)

    title = url
    summary = "~?~"
    try:
        thing = urlopen(url, timeout=10)
        soup = BeautifulSoup(thing)
        title = ''
        if len(submitted_title) > 0:
            title = submitted_title
        else:
            title = soup.title.string
        # Do some dumb summarizing if we can
        func = lambda a,v: a + " " + v.strip()
        visible_stuff = filter(visible, soup.findAll(text=True))
        summary = reduce(func, visible_stuff, "")[:900] + "..."
    except:
        pass
        #return Response('{"What happened?": '\
        #    'I dunno bs4 messed up somehow."}',
        #    mimetype=mimetype)

    created_at = int(mktime(datetime.now().utctimetuple()))

    is_image = url.lower().endswith(("jpg", "jpeg", "gif", "png"))
    thumbnail = gen_thumbnail_for_url(url, str(created_at))

    record = {
        "created_at": created_at,
        "title": title,
        "url": url,
        "person": person,
        "summary": summary,
        "person_color": PERSON_COLORS[random.randint(0, len(PERSON_COLORS)-1)],
        "is_image": is_image,
        "thumbnail": thumbnail
    }
    db.set(created_at, dumps(record))
    db.close()

    return Response('{"What happened?": "MUDADA"}',
        mimetype=mimetype)
Example #43
0
def get_post_by_date(key, db_file):
    item = None
    db = DB()
    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database."
    item = db.get(key)

    db.close()
    if item is not None:
        return loads(item)
    return dict()
def db_meta_info():
    meta = {}
    db = DB()
    db_file = current_app.config['DB_FILE']
    if not db.open("{0}".format(db_file), DB.OREADER):
        print "Could not open database (meta info)."
    meta["size"] = db.size()
    meta["count"] = db.count()
    db.close()

    return meta
Example #45
0
class KDB:
    def __init__(self, path, truncate=False):
        """
        Open a new connection to a database using the Kyoto Cabinet engine.

        Args:
            * path (str): Path to database.

        Kwargs:
            * truncate (bool, False): If database should be truncated before opening.
        """
        self.db = DB()
        self.batchsize = 1000
        self.batch = {}
        dbparams = '.kct#apow=0#bnum=10000000#msiz=' + str(2 << 30)
        if truncate:
            result = self.db.open(path + dbparams,
                                  DB.OWRITER | DB.OCREATE | DB.OTRUNCATE)
        else:
            result = self.db.open(path + dbparams, DB.OWRITER)
        if not result:
            raise PathError('DNA outdb open error: %s ' % self.db.error())
            exit(1)

    def get(self, key):
        """
        Retrieve the item with the given `key`.
        """
        return self.db.get(key)

    def put(self, key, val):
        """
        Put `val` at `key`.
        Note that disk writing is done in batches, so be sure to call `close` or `flush` to make sure that values are put into the store.
        """
        self.batch[key] = val
        if len(self.batch) >= self.batchsize:
            self.flush()

    def flush(self):
        """
        Write `put` calls to database.
        """
        self.db.set_bulk(self.batch)
        self.batch = {}

    def close(self):
        """
        Flush the database and delete the connection to it.
        """
        self.flush()
        del self.db
Example #46
0
    def init_read(self):
        self.mode = "read"

        if self.ext == ".csv":
            self._file = open(self.filename, "rb")
        elif self.ext == ".json":
            with open(self.filename, "rb") as f:
                self._storage = json.load(f)
        elif self.ext == ".kch":
            from kyotocabinet import DB
            self._storage = DB()
            self._storage.open(self.filename, DB.OREADER)
        elif self.ext == ".sqlite3":
            import sqlite3
            self._storage = sqlite3.connect(self.filename)
            self._cursor = self._storage.cursor()
        else:
            raise dexy.exceptions.UserFeedback("unsupported extension %s" % self.ext)
Example #47
0
def main():
    db_file = argv[1]
    username = argv[2]

    if not db_file and not username:
        print "Need db_file and username."
        return -1

    db = DB()
    if not db.open("{0}".format(db_file), DB.OWRITER):
        print "Could not open database."
        return -1

    all_keys = []
    cur = db.cursor()
    cur.jump()
    while True:
        rec = cur.get(False)
        if not rec:
            break

        loaded = loads(rec[1])
        if loaded["person"] == username:
            all_keys.append(cur.get_key())

        cur.step()
    cur.disable()

    print "Found {} records.".format(len(all_keys))
    for key in all_keys:
        print "Pending {}...".format(key)
        if len(argv) > 3 and argv[3] == '--delete':
            print "Removing {}...".format(key)
            if not db.remove(key):
                print "Could not remove key: {}".format(db.error())

    db.close()
Example #48
0
 def dbOpen(name):
     db = DB()
     dbpathname = abspath(self.path) + '/' + name + ".kch"
     if self.create:
         # if not db.open(abspath(self.path) + '/' + name + ".kch",
         # DB.OWRITER | DB.OCREATE | DB.OAUTOSYNC | DB.OAUTOTRAN):
         if not db.open(dbpathname, DB.OWRITER | DB.OCREATE):
             raise IOError("open error: %s %s" % (
                 dbpathname, str(db.error())))  # pragma: NO COVER
         return db
     else:
         # if not db.open(abspath(self.path) + '/' + name + ".kch",
         #         DB.OWRITER | DB.OAUTOSYNC | DB.OAUTOTRAN):
         if not db.open(dbpathname, DB.OWRITER):  # pragma: NO COVER
             raise IOError("open error: %s %s" % (
                 dbpathname, str(db.error())))  # pragma: NO COVER
         return db
Example #49
0
def get_items_last_X_days(db_file, X, munge=True):
    dates = {}
    db = DB()
    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database."

    X_days_ago = datetime.now() - timedelta(days=X)

    cur = db.cursor()
    cur.jump_back()
    while True:
        rec = cur.get(False)
        if not rec:
            break

        loaded = loads(rec[1])
        unix = float(loaded['created_at'])
        time = datetime.fromtimestamp(unix)

        if time > X_days_ago:
            if munge:
                date_obj = date(year=time.year, month=time.month, day=time.day)
            else:
                date_obj = time
            # Javascript expects Date.UTC to spit out dates of a certain
            # length.
            day_unix = int(mktime(date_obj.timetuple())) * 1000
            if dates.get(day_unix, False) == False:
                dates[day_unix] = {loaded["person"]: 1}
            else:
                relevant_dict = dates[day_unix]

                if relevant_dict.get(loaded["person"], False) == False:
                    relevant_dict[loaded["person"]] = 1
                else:
                    relevant_dict[
                        loaded["person"]] = relevant_dict[loaded["person"]] + 1
        else:
            break

        cur.step_back()
    cur.disable()
    db.close()

    return dates
Example #50
0
def get_last_items(db_file, pages=1):
    items = []
    db = DB()
    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database."

    cur = db.cursor()
    cur.jump_back()
    while len(items) < (pages * FILTER_MAX):
        rec = cur.get(False)
        if not rec:
            break

        items.append(rec)
        cur.step_back()
    cur.disable()
    db.close()

    return items
Example #51
0
def main():
    db_file = argv[1]
    username = argv[2]

    if not db_file and not username:
        print "Need db_file and username."
        return -1

    db = DB()
    if not db.open("{0}".format(db_file), DB.OWRITER):
        print "Could not open database."
        return -1

    all_keys = []
    cur = db.cursor()
    cur.jump()
    while True:
        rec = cur.get(False)
        if not rec:
            break

        loaded = loads(rec[1])
        if loaded["person"] == username:
            all_keys.append(cur.get_key())

        cur.step()
    cur.disable()

    print "Found {} records.".format(len(all_keys))
    for key in all_keys:
        print "Pending {}...".format(key)
        if len(argv) > 3 and argv[3] == '--delete':
            print "Removing {}...".format(key)
            if not db.remove(key):
                print "Could not remove key: {}".format(db.error())

    db.close()
Example #52
0
def get_all_items(db_file):
    items = []
    db = DB()
    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database."

    cur = db.cursor()
    cur.jump()
    while True:
        rec = cur.get(False)
        if not rec:
            break
        items.append(rec)
        cur.step()

    cur.disable()
    db.close()

    sorted_items_for_viewing = [loads(item[1]) for item in items]
    return sorted_items_for_viewing
Example #53
0
def get_page_count(item_filter=lambda x: True):
    count = 0
    db = DB()
    db_file = current_app.config['DB_FILE']
    if not db.open("{0}".format(db_file),
                   DB.OREADER | DB.OWRITER | DB.OCREATE):
        print "Could not open database (get_page_count). Error: {}".format(
            db.error())

    cur = db.cursor()
    cur.jump_back()
    while True:
        rec = cur.get(False)
        if not rec:
            break

        if item_filter(rec):
            count = count + 1

        cur.step_back()

    cur.disable()
    db.close()
    return count / FILTER_MAX
Example #54
0
def gen_thumbnails(db_file):
    db = DB()
    if not db.open("{0}".format(db_file), DB.OREADER | DB.OWRITER):
        sys.exit(1)

    cur = db.cursor()
    cur.jump_back()
    while True:
        rec = cur.get(False)

        if not rec:
            break

        loaded = loads(rec[1])
        is_image = loaded["url"].lower().endswith(
            ("jpg", "jpeg", "gif", "png"))

        if is_image:
            print "Thumbnailing {}".format(loaded["url"])
            loaded["is_image"] = True
            try:
                thumbnail = gen_thumbnail_for_url(loaded["url"], rec[0])
            except IOError as e:
                print "IOError: {}".format(e)
                print "Save result: {}".format(cur.set_value(dumps(loaded)))
                cur.step_back()
                continue

            if thumbnail:
                loaded["thumbnail"] = thumbnail
                print "Thumbnailed {}".format(loaded["url"])
                print "Save result: {}".format(cur.set_value(dumps(loaded)))

        cur.step_back()

    cur.disable()
    db.close()

    return True
Example #55
0
def get_page_count(item_filter = lambda x: True):
    count = 0
    db = DB()
    db_file = current_app.config['DB_FILE']
    if not db.open("{0}".format(db_file), DB.OREADER | DB.OWRITER | DB.OCREATE):
        print "Could not open database (get_page_count). Error: {}".format(db.error())

    cur = db.cursor()
    cur.jump_back()
    while True:
        rec = cur.get(False)
        if not rec:
            break

        if item_filter(rec):
            count = count + 1

        cur.step_back()

    cur.disable()
    db.close()
    return count / FILTER_MAX
Example #56
0
def get_items_on_page(page, db_file):
    item_iter = 0
    items = []
    db = DB()
    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database."

    cur = db.cursor()
    cur.jump_back()
    while len(items) < FILTER_MAX:
        rec = cur.get(False)
        if not rec:
            break

        if item_iter >= (FILTER_MAX * page):
            items.append(rec)

        item_iter = item_iter + 1
        cur.step_back()
    cur.disable()
    db.close()

    return items
class FeatureSelector( Frontend ):


  def __init__( self, fn, mode ):    

    Frontend.__init__( self, fn, mode );

    self._kdbfn = None;
    self._kdb = None;

    self._ldbdn = None;
    self._ldb = None;

    self._len_c = None;
    self._len_b = None;
    self._len_x = None;

    self._ic = None;
    self._icbp = None;

    self._needs_initialization = True;

    self._core_dims = set();
    self._satellite_dims = set();
    self._removed_dims = set();

    self._remove_c = set();
    self._remove_b = set();
    self._remove_x = set();

    self.bypass_c = False;
    self.bypass_b = False;
    self.bypass_x = False;


  def __enter__( self ):

    if self._mode == "r":
      with open( self._fn, "rb" ) as f:
        state = pickle_load( f );
        self._len_c = state[ "c" ];
        self._len_b = state[ "b" ];
        self._len_x = state[ "x" ];
        self._lenrow = self._len_c + self._len_b + self._len_x;
        self._ic = state[ "ic" ];
        self._icbp = state[ "icbp" ];

    if self._mode == "w":

      with NamedTemporaryFile() as tmpfn:
        self._kdbfn = tmpfn.name + '.kch';
      self._kdb = KDB();
      try:
        assert self._kdb.open( self._kdbfn, KDB.OWRITER | KDB.OCREATE );
      except:
        print( str( self._kdb.error() ) );
        raise;

      with TemporaryDirectory() as tmpdirname:
        self._ldbdn = tmpdirname;
      self._ldb = LDB( self._ldbdn, create_if_missing=True );

    return self;

  def __exit__( self, exc_type, exc_value, traceback ):

    assert Frontend.__exit__( self, exc_type, exc_value, traceback ) == False;

    if self._ldb is not None:
      sleep( 3.0 );
      self._ldb.close()

    if self._ldbdn is not None:
      rmtree( self._ldbdn );

    if self._kdb is not None:
      try:
        assert self._kdb.close();
      except:
        print( str( self._kdb.error() ) );
        raise;

    if self._kdbfn is not None:
      remove( self._kdbfn );


  def train( self, row ):

    ( y, c, b, x ) = row;

    if self._len_c is None:
      self._len_c = len(c);
    assert self._len_c == len(c);

    if self._len_b is None:
      self._len_b = len(b);
    assert self._len_b == len(b);

    if self._len_x is None:
      self._len_x = len(x);
    assert self._len_x == len(x);

    row = c + b + x;

    if Frontend.train( self, row ):
      return True;

    keyfmt = '>IIIII';

    for i in range( 0, self._lenrow ):
      for j in range( 0, self._lenrow ):

        if ( i >= j ) and ( not ( i == self._lenrow-1 ) ):
          continue;

        key = pack( keyfmt, i, j, y, row[i], row[j] );

        try:
          assert self._kdb.increment( key, 1, 0 );
        except:
          print( str(self._kdb.error()) );
          raise;


  def _stats( self, cnt_by_a, cnt_by_b, cnt_by_ab ):

    h_a = 0.0;
    h_b = 0.0;
    h_ab = 0.0;

    for ( val_a, cnt ) in cnt_by_a.items():
      p = float(cnt) / float(self._rowcount);
      if p > 0.0:      
        h_a -= p * log( p, 2.0 );

    for ( val_b, cnt ) in cnt_by_b.items():
      p = float(cnt) / float(self._rowcount);
      if p > 0.0:      
        h_b -= p * log( p, 2.0 );

    for( (val_a,val_b), cnt ) in cnt_by_ab.items():
      p = float(cnt) / float(self._rowcount);
      if p > 0.0:      
        h_ab -= p * log( p, 2.0 );

    if h_a == 0.0:
      return 1.0;

    if h_b == 0.0:
      return 1.0;
    
    mi = h_a + h_b - h_ab;
    return ( mi / min( h_a, h_b ), h_a, h_b, h_ab, mi );


  def _get_info_content_by_dimension( self, i ):

    keyfmt = '>IIIII';
    valfmt = '>Q';

    j = None;

    cnt_by_a = {};
    cnt_by_b = {};
    cnt_by_ab = {};
    total = 0;

    with self._ldb.iterator() as it:

      it.seek( pack( keyfmt, i,0,0,0,0 ) );

      for ( key, val ) in it:

        key = unpack( keyfmt, key );
        val = unpack( valfmt, val )[ 0 ];

        if not ( key[0] == i ):
          break;

        if j is None:
          j = key[1];

        if not ( key[1] == j ):
          break;

        # key[2] is the y-value
        a = key[2];

        # key[3] is the value for the i-th dimension
        b = key[3];

        cnt_by_ab[ (a,b) ] = cnt_by_ab.get( (a,b), 0 ) + val;
        cnt_by_a[ a ] = cnt_by_a.get( a, 0 ) + val;
        cnt_by_b[ b ] = cnt_by_b.get( b, 0 ) + val;

        total += val;

    try:
      assert total == self._rowcount;
    except:
      print( i, j, total, self._rowcount );
      raise;

    return self._stats( cnt_by_a, cnt_by_b, cnt_by_ab );


  def _get_info_content_by_pair( self, i, j ):

    keyfmt = '>IIIII';
    valfmt = '>Q';

    cnt_by_a = {};
    cnt_by_b = {};
    cnt_by_ab = {};
    total = 0;

    with self._ldb.iterator() as it:

      it.seek( pack( keyfmt, i,j,0,0,0 ) );

      for ( key, val ) in it:

        key = unpack( keyfmt, key );
        val = unpack( valfmt, val )[ 0 ];

        if not ( ( key[0] == i ) and ( key[1] == j ) ):
          break;

        # key[2] is the y-value, key[3] the i-th value for the i-th dim
        a = ( key[2], key[3] ); 

        # key[2] is the y-value, key[4] the i-th value for the j-th dim
        b = ( key[2], key[4] );

        assert (a,b) not in cnt_by_ab;
        cnt_by_ab[ (a,b) ] = cnt_by_ab.get( (a,b), 0 ) + val;

        cnt_by_a[ a ] = cnt_by_a.get( a, 0 ) + val;
        cnt_by_b[ b ] = cnt_by_b.get( b, 0 ) + val;

        total += val;

    assert total == self._rowcount;

    return self._stats( cnt_by_a, cnt_by_b, cnt_by_ab );


  def _finalize( self ):

    assert Frontend._finalize( self ) is None;

    if False:
      print( "unique combinations = ", self._kdb.count() );

    keyfmt = '>IIIII';
    valfmt = '>Q';

    c = self._kdb.cursor();
    c.jump();

    gt2 = 0;
    gt4 = 0;
    gt8 = 0;
    gt16 = 0;
    gt32 = 0;

    while True:

      r = c.get( True );
      if not r:
        break;

      self._ldb.put( r[0], r[1] );

      key = unpack( keyfmt, r[0] );
      val = unpack( valfmt, r[1] )[ 0 ];

      if val > 2:
        gt2 += 1;
      if val > 4:
        gt4 += 1;
      if val > 8:
        gt8 += 1;
      if val > 16:
        gt16 += 1;
      if val > 32:
        gt32 += 1;

    if False:
      print( gt2, gt4, gt8, gt16, gt32 );

    self._ic = {};
    for i in range( 0, self._lenrow ):
      self._ic[ i ] = self._get_info_content_by_dimension( i );

    self._icbp = {};

    for i in range( 0, self._lenrow ):
      for j in range( 0, self._lenrow ):

        if i >= j:
          continue;

        self._icbp[ (i,j) ] = self._get_info_content_by_pair( i, j );


    self._state \
      = { "ic": self._ic,
          "icbp": self._icbp,
          "c": self._len_c,
          "b": self._len_b,
          "x": self._len_x };


  def _fmt_dim( self, d_ ):

    d = None;
    if d_ < self._len_c:
      d = "c" + str( d_ );
    elif d_ < self._len_c + self._len_b:
      d = "b" + str( d_ - self._len_c );
    elif d_ < self._len_c + self._len_b + self._len_x:
      d = "x" + str( d_ - self._len_c - self._len_b );
    else:
      assert False;
    return "{:d}({:s})".format( d_, d );


  def _init( self ):

    self._needs_initialization = False;

    if False:

      for i in sorted( self._ic ):

        (corr,h_a,h_b,h_ab,mi) = self._ic[ i ];

        print(
            "{:s} {:1.4f} {:1.4f} {:1.4f} {:1.4f} {:1.4f}"\
             .format(
                  self._fmt_dim( i ),
                  corr,
                  h_a,
                  h_b,
                  h_ab,
                  mi
                )
          );

      for (i,j) in sorted( self._icbp ):

        (corr,h_a,h_b,h_ab,mi) = self._icbp[ (i,j) ];

        print(
            "{:s} {:s} {:1.4f} {:1.4f} {:1.4f} {:1.4f} {:1.4f}"\
             .format(
                  self._fmt_dim( i ),
                  self._fmt_dim( j ),
                  corr,
                  h_a,
                  h_b,
                  h_ab,
                  mi
                )
          );

    entropy \
      = [ ( h_ab, i ) \
          for ( i, (corr,h_a,h_b,h_ab,mi) ) in self._ic.items() ];          

    output_correlation \
      = [ ( corr, i ) \
          for ( i, (corr,h_a,h_b,h_ab,mi) ) in self._ic.items() ];

    self._core_dims = set();

    self._core_dims \
      |= { i \
           for ( h_ab, i ) \
           in sorted( entropy, reverse=True )[ :5 ] };

    self._core_dims \
      |= { i \
           for ( h_ab, i ) \
           in sorted( output_correlation, reverse=True )[ :3 ] };

    if True:
      print(
          "core = ",
          " ".join([ self._fmt_dim(d) for d in self._core_dims ])
        );

    self._satellite_dims = set();

    for core_dim in self._core_dims:

      satellite_dim = None;
      satellite_dim_c = None;
      satellite_dim_stats = None;

      for ( (i,j), (corr,h_a,h_b,h_ab,mi) ) in self._icbp.items():

        if corr <= 0.5:
          continue;

        other_dim = None;
        if i == core_dim:
          other_dim = j;
        elif j == core_dim:
          other_dim = i;
        else:
          continue;

        if ( satellite_dim_c is None ) or ( corr > satellite_dim_c ):

          satellite_dim = other_dim;
          satellite_dim_c = corr;
          satellite_dim_stats = (corr,h_a,h_b,h_ab,mi);

      if satellite_dim is not None:

        self._satellite_dims.add( satellite_dim );      

        if False:

          print(
              '->',
              self._fmt_dim(core_dim),
              self._fmt_dim(satellite_dim)
            );

          print(
              "{:1.4f} {:1.4f} {:1.4f} {:1.4f} {:1.4f}"\
               .format( *(corr,h_a,h_b,h_ab,mi) )
            );

    if True:

      print(
          "satellite = ",
          " ".join([ self._fmt_dim(d) for d in self._satellite_dims ])
        );

    self._removed_dims = set();
    for i in self._ic:
      if i not in self._core_dims and i not in self._satellite_dims:
        self._removed_dims.add( i );

    if True:

      print(
          "removed = ",
          " ".join([ self._fmt_dim(d) for d in self._removed_dims ])
        );

    for d_ in self._removed_dims:
      if d_ < self._len_c:
        self._remove_c.add( d_ );
      elif d_ < self._len_c + self._len_b:
        self._remove_b.add( d_ - self._len_c );
      elif d_ < self._len_c + self._len_b + self._len_x:
        self._remove_x.add( d_ - self._len_c - self._len_b );
      else:
        assert False;


  def apply_c( self, c ):

    if self.bypass_c:
      return c;

    if self._needs_initialization:
      self._init();

    c_ = [];
    for ( i, cval ) in enumerate( c ):
      if not i in self._remove_c:
        c_.append( cval );
    return c_;


  def apply_b( self, b ):

    if self.bypass_b:
      return b;

    if self._needs_initialization:
      self._init();

    b_ = [];
    for ( i, bval ) in enumerate( b ):
      if not i in self._remove_b:
        b_.append( bval );
    return b_;


  def apply_x( self, x ):

    if self.bypass_x:
      return x;

    if self._needs_initialization:
      self._init();

    x_ = [];
    for ( i, xval ) in enumerate( x ):
      if not i in self._remove_x:
        x_.append( xval );
    return x_;


  def __call__( self, row ):

    if self._needs_initialization:
      self._init();

    ( y, c, b, x ) = row;

    y_ = y;

    return \
      ( y_,
        self.apply_c( c ),
        self.apply_b( b ),
        self.apply_x( x ) );
Example #58
0
def get_user_stats(username, db_file):
    item = {
        "username": username,
        "aliases": [],
        "total_posts": 0,
        "domains": {},
        "first_post_date": None,
        "first_post_date_unix": None,
        "most_recent_post": None,
        "most_recent_post_unix": 0,
        "average_posts_per_hour": 0.0,
        "average_posts_per_day": 0.0,
        "average_posts_per_week": 0.0
    }

    db = DB()
    if not db.open("{0}".format(db_file), DB.OREADER | DB.OCREATE):
        print "Could not open database."

    cur = db.cursor()
    cur.jump()
    while True:
        rec = cur.get(False)
        if not rec:
            break

        loaded_rec = loads(rec[1])
        if loaded_rec['person'] != username:
            cur.step()
            continue

        # Looks like this is a post by the user we're looking for
        split = get_domain(loaded_rec)

        if item['domains'].get(split, False) == False:
           item['domains'][split] = 1
        else:
            item['domains'][split] = item['domains'][split] + 1

        if item['first_post_date_unix'] is None:
            item['first_post_date_unix'] = loaded_rec['created_at']

        if item['most_recent_post_unix'] < loaded_rec['created_at']:
            item['most_recent_post_unix'] = loaded_rec['created_at']

        item['total_posts'] = item['total_posts'] + 1

        cur.step()

    cur.disable()
    db.close()

    # Clean up everything

    first_time = None
    if item['first_post_date_unix'] is not None:
        unix = float(item['first_post_date_unix'])
        first_time = datetime.fromtimestamp(unix)
        item['first_post_date'] = first_time.isoformat()

    recent_time = None
    if item['most_recent_post_unix'] is not None:
        unix = float(item['most_recent_post_unix'])
        recent_time = datetime.fromtimestamp(unix)
        item['most_recent_post'] = recent_time.isoformat()

    if first_time and recent_time:
        delta = recent_time - first_time
        item['user_age_days'] = delta.days
        item['user_age_seconds'] = delta.total_seconds()
        item['average_posts_per_hour'] = item['total_posts'] / (delta.total_seconds() / 60.0)
        item['average_posts_per_day'] = item['total_posts'] / (delta.total_seconds() / 60.0 / 24.0)
        item['average_posts_per_week'] = item['total_posts'] / (delta.total_seconds() / 60.0 / 24.0 / 7.0)

    return item