def test_sample_composition_update(self):
tester = SampleComposition(85)
# Make sure that the sample composition that we are working with
# is a control sample
self.assertEqual(tester.sample_composition_type, 'blank')
self.assertIsNone(tester.sample_id)
self.assertEqual(tester.content, 'blank.21.H1')
# Update a well from CONTROL -> EXPERIMENTAL SAMPLE
self.assertEqual(tester.update('1.SKM8.640201'), '1.SKM8.640201')
self.assertEqual(tester.sample_composition_type, 'experimental sample')
self.assertEqual(tester.sample_id, '1.SKM8.640201')
self.assertEqual(tester.content, '1.SKM8.640201')
# Update a well from EXPERIMENTAL SAMPLE -> EXPERIMENTAL SAMPLE
self.assertEqual(tester.update('1.SKB6.640176'), '1.SKB6.640176')
self.assertEqual(tester.sample_composition_type, 'experimental sample')
self.assertEqual(tester.sample_id, '1.SKB6.640176')
self.assertEqual(tester.content, '1.SKB6.640176')
# Update a well from EXPERIMENTAL SAMPLE -> CONTROL
self.assertEqual(tester.update('vibrio.positive.control'),
'vibrio.positive.control.21.H1')
self.assertEqual(tester.sample_composition_type,
'vibrio.positive.control')
self.assertIsNone(tester.sample_id)
self.assertEqual(tester.content, 'vibrio.positive.control.21.H1')
# Update a well from CONROL -> CONTROL
self.assertEqual(tester.update('blank'), 'blank.21.H1')
self.assertEqual(tester.sample_composition_type, 'blank')
self.assertIsNone(tester.sample_id)
self.assertEqual(tester.content, 'blank.21.H1')
def test_sample_composition_update(self):
tester = SampleComposition(85)
# Make sure that the sample composition that we are working with
# is a control sample
self.assertEqual(tester.sample_composition_type, 'blank')
self.assertIsNone(tester.sample_id)
self.assertEqual(tester.content, 'blank.21.H1')
# Update a well from CONTROL -> EXPERIMENTAL SAMPLE
self.assertEqual(tester.update('1.SKM8.640201'),
('1.SKM8.640201', True))
self.assertEqual(tester.sample_composition_type, 'experimental sample')
self.assertEqual(tester.sample_id, '1.SKM8.640201')
self.assertEqual(tester.content, '1.SKM8.640201')
# This test here tests that the code automatically detects when a
# sample is duplicated in the plate and adds the plate ID and
# well ID to all duplicates.
t2 = SampleComposition(86)
self.assertEqual(t2.update('1.SKM8.640201'),
('1.SKM8.640201.21.H2', True))
self.assertEqual(t2.sample_composition_type, 'experimental sample')
self.assertEqual(t2.sample_id, '1.SKM8.640201')
self.assertEqual(t2.content, '1.SKM8.640201.21.H2')
self.assertEqual(tester.sample_composition_type, 'experimental sample')
self.assertEqual(tester.sample_id, '1.SKM8.640201')
self.assertEqual(tester.content, '1.SKM8.640201.21.H1')
# This test here tests that the code automatically detects when a
# sample is no longer duplicated in the plate and removes the plate
# id and well id from the sample content
self.assertEqual(t2.update('blank'), ('blank.21.H2', True))
self.assertEqual(tester.content, '1.SKM8.640201')
# Update a well from EXPERIMENTAL SAMPLE -> EXPERIMENTAL SAMPLE
self.assertEqual(tester.update('1.SKB6.640176'),
('1.SKB6.640176.21.H1', True))
self.assertEqual(tester.sample_composition_type, 'experimental sample')
self.assertEqual(tester.sample_id, '1.SKB6.640176')
self.assertEqual(tester.content, '1.SKB6.640176.21.H1')
# Update a well from EXPERIMENTAL SAMPLE -> CONTROL
self.assertEqual(tester.update('vibrio.positive.control'),
('vibrio.positive.control.21.H1', True))
self.assertEqual(tester.sample_composition_type,
'vibrio.positive.control')
self.assertIsNone(tester.sample_id)
self.assertEqual(tester.content, 'vibrio.positive.control.21.H1')
# Update a well from CONROL -> CONTROL
self.assertEqual(tester.update('blank'), ('blank.21.H1', True))
self.assertEqual(tester.sample_composition_type, 'blank')
self.assertIsNone(tester.sample_id)
self.assertEqual(tester.content, 'blank.21.H1')
# Update a well from CONROL -> Unknown
self.assertEqual(tester.update('Unknown'), ('Unknown', False))
self.assertEqual(tester.sample_composition_type, 'experimental sample')
self.assertIsNone(tester.sample_id)
self.assertEqual(tester.content, 'Unknown')
# Update a well from Unknown -> CONTROL
self.assertEqual(tester.update('blank'), ('blank.21.H1', True))
self.assertEqual(tester.sample_composition_type, 'blank')
self.assertIsNone(tester.sample_id)
self.assertEqual(tester.content, 'blank.21.H1')
