def save(self, commit=True):
instance = super(DnaSampleForm, self).save(commit=False)
#instance.historyDescription = self.cleaned_data['genebank'] # etc
if self.cleaned_data['dnaConstruct']==None:
dna2db = DnaComponent(displayId=self.cleaned_data['DNA_Display_ID'],description=self.cleaned_data['DNA_Description'], name =self.cleaned_data['DNA_Name'], sequence = self.cleaned_data['sequence'],status = self.cleaned_data['DNA_Status'], genBankfile = self.cleaned_data['genebank'])
dna2db.saveSequenceWithoutAnnotations()
#dna2db.save()
instance.dnaConstruct = dna2db
else:
instance.dnaConstruct = self.cleaned_data['dnaConstruct']
if commit:
instance.save()
return instance
def save(self, commit=True):
instance = super(DnaSampleForm, self).save(commit=False)
#instance.historyDescription = self.cleaned_data['genebank'] # etc
if self.cleaned_data['dnaConstruct'] == None:
dna2db = DnaComponent(
displayId=self.cleaned_data['DNA_Display_ID'],
description=self.cleaned_data['DNA_Description'],
name=self.cleaned_data['DNA_Name'],
sequence=self.cleaned_data['sequence'],
status=self.cleaned_data['DNA_Status'],
genBankfile=self.cleaned_data['genebank'])
dna2db.saveSequenceWithoutAnnotations()
#dna2db.save()
instance.dnaConstruct = dna2db
else:
instance.dnaConstruct = self.cleaned_data['dnaConstruct']
if commit:
instance.save()
return instance
fir = fullSequence[first:]
sec = fullSequence[:secon]
seq = fir+sec
else:
seq = fullSequence[first:secon]
name=obj["text3"]
descrp=obj["text4"]
dnatype=obj["text5"]
optimizedfor=obj["text7"].split(' - ')
try:
chassisOptimizedFor = Chassis.objects.get(displayId=optimizedfor[0])
except Chassis.DoesNotExist:
chassisOptimizedFor = None
subCtVectorType = DnaComponentType.objects.filter(name__in=[dnatype,'Annotation'])
dnaAnnot = DnaComponent(displayId=id,description=descrp, name =name, sequence = seq,optimizedFor = chassisOptimizedFor, created_by = created_by)
dnaAnnot.save()
if (id.upper()=='(AUTO)' or id.upper()==''):
if (dnatype=='Vector Backbone' or dnatype=='Vector'):
lastComponent = DnaComponent.objects.filter(displayId__regex='^Ve.*').order_by('-displayId')[:1]
leng = len(lastComponent)
if leng>0:
lastComponentDisplayID = int(lastComponent[0].displayId[2:])
else:
lastComponentDisplayID = 0
#pkUsed = dnaAnnot.pk
pkUsed = lastComponentDisplayID + 1
stringId = '00000000'+str(pkUsed)
stringId = stringId[-3:]
seq = fullSequence[first:secon]
name = obj["text3"]
descrp = obj["text4"]
dnatype = obj["text5"]
optimizedfor = obj["text7"].split(' - ')
try:
chassisOptimizedFor = Chassis.objects.get(
displayId=optimizedfor[0])
except Chassis.DoesNotExist:
chassisOptimizedFor = None
subCtVectorType = DnaComponentType.objects.filter(
name__in=[dnatype, 'Annotation'])
dnaAnnot = DnaComponent(displayId=id,
description=descrp,
name=name,
sequence=seq,
optimizedFor=chassisOptimizedFor,
created_by=created_by)
dnaAnnot.save()
if (id.upper() == '(AUTO)' or id.upper() == ''):
if (dnatype == 'Vector Backbone' or dnatype == 'Vector'):
lastComponent = DnaComponent.objects.filter(
displayId__regex='^Ve.*').order_by(
'-displayId')[:1]
leng = len(lastComponent)
if leng > 0:
lastComponentDisplayID = int(
lastComponent[0].displayId[2:])
else:
lastComponentDisplayID = 0
