def exportProtocol(self, protocol, root_path):
protocol.update()
expDir = entityRepository.exportEntity(protocol, root_path)
# export notes
notesDir = expDir.joinpath('notes')
notes = protocol.getComments(count=1000)
for note in notes:
note.export(notesDir)
# save materials
materialsDir = expDir.joinpath('materials')
materials = protocol.getMaterials()
for material in materials:
material.export(materialsDir)
# save data
dataDir = expDir.joinpath('data')
data = protocol.getDataFields()
for dat in data:
dat.export(dataDir)
# get html
html = htmlExportService.getHTML(protocol)
html_with_paths = htmlExportService.insertFilepaths(expDir, html)
with open(expDir.joinpath('entity.html'), 'w') as out:
out.write(html_with_paths)
def exportExperiment(self, experiment, root_path):
experiment.update()
expDir = entityRepository.exportEntity(experiment, root_path)
# export entry
experiment.root_experiment.export(expDir, folderName='entry')
# export protocols
protocolsDir = expDir.joinpath('protocols')
protocols = experiment.getProtocols(count=100)
for protocol in protocols:
protocol.export(protocolsDir)
# export notes
notesDir = expDir.joinpath('notes')
notes = experiment.getComments(count=1000)
for note in notes:
note.export(notesDir)
# get html
html = htmlExportService.getHTML(experiment)
html_with_paths = htmlExportService.insertFilepaths(expDir, html)
with open(expDir.joinpath('entity.html'), 'w',
encoding="utf-8") as out:
out.write(html_with_paths)
def exportFile(self, file, root_path):
fileDir = entityRepository.exportEntity(file,
root_path,
folderName=str(file.id))
file.save(fileDir)
if file.image_annotation is not None:
annotatedFile = File(file.image_annotation, file.__user__)
annotatedFile.export(root_path)
def exportComment(self, comment, rootPath):
commentDir = entityRepository.exportEntity(comment, rootPath)
# export comment
nestedCommentsDir = commentDir.joinpath('comments')
nestedComments = comment.getComments(count=1000)
for nestedComment in nestedComments:
nestedComment.export(nestedCommentsDir)
def export(self, rootPath, folderName=None):
"""
Export the entity to the directory specified.
Parameters
-------
path (str)
The path to the directory to save the experiment.
Example
-------
::
experiment = user.getExperiment(17000)
experiment.export('/my_folder')
"""
from labstep.generic.entity.repository import entityRepository
return entityRepository.exportEntity(self, rootPath, folderName=folderName)
def exportExperimentProtocol(self, experimentProtocol, rootPath,
folderName):
experimentProtocol.update()
expDir = entityRepository.exportEntity(experimentProtocol,
rootPath,
folderName=folderName)
# save materials
materialsDir = expDir.joinpath('materials')
materials = experimentProtocol.getMaterials()
for material in materials:
material.export(materialsDir)
# save data
dataDir = expDir.joinpath('data')
data = experimentProtocol.getDataFields()
for dat in data:
dat.export(dataDir)