def onSubmit(self):
self.frame.place_forget() # hide login frame
username = self.username.get() # get user input
apikey = self.apikey.get() # get user input
user = labstep.authenticate(username,apikey) # Login via labstep API
messagebox.showinfo('Login Success', f'You have successfully authenticated as {user.first_name} {user.last_name}')
self.onSuccess(user)
def uploadDataToLabstep(user):
user = labstep.authenticate(user['username'], user['apikey'])
experiment = user.newExperiment('Python Test')
experiment.addComment('Raw data from the plate reader',
'cache/plate_data_raw.csv')
experiment.addComment('Script used to analyse the data', 'analysis.py')
experiment.addComment('Processed data', 'cache/plate_data_processed.csv')
experiment.addComment('Plot of processed data', 'cache/plot.png')
print('Data Uploaded!')
def run(self):
try:
user = ""
key = ""
with open("key.cfg", "r") as kf:
user = kf.readline().rstrip("\n")
key = kf.readline().rstrip("\n")
self.user = labstep.authenticate(user, key)
print(self.user.name)
except Exception as ex:
self.user = None
print(ex)
def getExperiment(self):
"""
Get Experiment based on Jupyter environment variables.
"""
if ('LABSTEP_API_KEY' not in os.environ.keys()
or 'LABSTEP_JUPYTER_EXPERIMENT_GUID' not in os.environ.keys()):
raise Exception("Not in jupyter")
user = labstep.authenticate()
experimentGuid = os.environ['LABSTEP_JUPYTER_EXPERIMENT_GUID']
return experimentProtocolRepository.getExperimentProtocolByGuid(
user, experimentGuid)
def __init__(self):
self.observers = []
for user in users:
path = user['folder']
lsUser = labstep.authenticate(user['username'], user['apikey'])
handler = CustomHandler(self, lsUser)
observer = Observer()
observer.schedule(handler, path, recursive=True)
observer.start()
self.observers.append(observer)
self.queue = Queue()
self.gui = GUI()
self.gui.window.bind("<Destroy>", self.shutdown)
self.gui.window.bind("<<WatchdogEvent>>", self.handle_watchdog_event)
def test_authenticate(self):
authUser = labstep.authenticate(LABSTEP_API_USERNAME,
LABSTEP_API_APIKEY)
assert authUser.id is not None
def authUser():
return labstep.authenticate(LABSTEP_API_USERNAME, LABSTEP_API_APIKEY)
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
import labstep
import serial
# Authenticate Labstep User
user = labstep.authenticate('*****@*****.**', 'APIKEY')
# Select device
device = user.getDevice(2314)
print(f'Connected to {device.name}')
# Open Serial Port to Device
ser = serial.Serial(port='/dev/ttyACM0', timeout=2)
# Flush input to avoid data overlap and start fresh
ser.flushInput()
# Set up loop to continuously monitor data from device
try:
while True:
# Read line of data stream
raw_input = ser.readline()
# Strip new line characters from the end of the data.
stripped_input = raw_input[0:len(raw_input)-2]
# Decode the raw bytes data to a float
import labstep
import schedule
import time
import smtplib
from prettytable import PrettyTable, ALL
from email.mime.multipart import MIMEMultipart
from email.mime.text import MIMEText
from string import Template
## Login to Labstep Workspace
user = labstep.authenticate('YOUR_USER_NAME', 'YOUR_API_KEY')
workspace = user.getWorkspace(13934)
def getNewOrderRequests():
## Get the latest order requests
return workspace.getOrderRequests(status='new')
def getOrderRow(order):
name = order.resource['name']
resource = user.getResource(order.resource['id'])
metadata = resource.getMetadata()
account_number = "MY_ACCOUNT_NUMBER"
vat_status = 'No'
try:
code = list(filter(lambda x: x.label == 'Product Code',
metadata))[0].value
except:
code = '?'
print('Product Code not found for ', name)
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
import os
import labstep
import time
from watchdog.observers import Observer
from watchdog.events import RegexMatchingEventHandler
USER_NAME = os.getenv('LABSTEP_USERNAME')
API_KEY = os.getenv('LABSTEP_API_KEY')
# Authenticate Labstep User
user = labstep.authenticate(USER_NAME, API_KEY)
# Select device
device = user.getDevice(2314)
print(f'Connected to {device.name}')
# Define what to do when data is detected
def onDataDetected(event):
device.addData(fieldName='Raw Data File',
fieldType='file',
filepath=event.src_path)
# Use watchdog built in regex event handler
# This will detect files that end in .csv
my_event_handler = RegexMatchingEventHandler([r".*\.csv$"])