def generate_report(model, scanned_par1, scanned_par2, outputdir, sim_plots_folder):
"""
The third pipeline step: report generation.
:param model: the model name
:param scanned_par1: the first scanned parameter
:param scanned_par2: the second scanned parameter
:param outputdir: the directory containing the report
:param sim_plots_folder: the folder containing the plots.
:return: no output
"""
if not os.path.exists(os.path.join(outputdir, sim_plots_folder)):
logger.error("input_dir " + os.path.join(outputdir, sim_plots_folder) +
" does not exist. Analyse the data first.")
return
logger.info("Generating a LaTeX report")
logger.info(model)
filename_prefix = "report__double_param_scan_"
latex_report_double_param_scan(outputdir, sim_plots_folder, filename_prefix,
model, scanned_par1, scanned_par2)
pdflatex = which("pdflatex")
if pdflatex is None:
logger.error("pdflatex not found! pdflatex must be installed for pdf reports.")
return
logger.info("Generating PDF report")
pdf_report(outputdir, filename_prefix + model + ".tex")
def generate_report(model, outputdir, sim_plots_folder):
if not os.path.exists(os.path.join(outputdir, sim_plots_folder)):
logger.error("input_dir " + os.path.join(outputdir, sim_plots_folder) +
" does not exist. Analyse the data first.")
return
logger.info("Generating a LaTeX report")
filename_prefix="report__sensitivity_"
latex_report_simulate(outputdir, sim_plots_folder, model, filename_prefix)
pdflatex = which("pdflatex")
if pdflatex is None:
logger.error("pdflatex not found! pdflatex must be installed for pdf reports.")
return
logger.info("Generating PDF report")
pdf_report(outputdir, filename_prefix + model + ".tex")
def generate_report(model, outputdir, sim_plots_folder):
"""
The third pipeline step: report generation.
:param model: the model name
:param outputdir: the output directory to store the report
:param sim_plots_folder: the folder containing the plots
:return:
"""
if not os.path.exists(os.path.join(outputdir, sim_plots_folder)):
logger.error(
"inputdir " + os.path.join(outputdir, sim_plots_folder) + " does not exist. Analyse the data first.")
return
logger.info("Generating a LaTeX report")
filename_prefix = "report__simulate_"
latex_report_simulate(outputdir, sim_plots_folder, model, filename_prefix)
logger.info("Generating PDF report")
pdf_report(outputdir, filename_prefix + model + ".tex")