def init_filters_and_variables(self):
self.num_filters = 6
self.num_variables = 1 + self.num_filters
# Start the sigmoids at weak strengths
self.sigmoid_beta = 0.0625
self.sigmoid_eta = 0.5
self.sigmoid_0 = sigmoid.Sigmoid(self.sigmoid_beta, self.sigmoid_eta)
self.sigmoid_4 = sigmoid.Sigmoid(self.sigmoid_beta, self.sigmoid_eta)
x_dimension_idx = 0
y_dimension_idx = 1
z_dimension_idx = 2
z_voxel_layers = self.size[2]
self.layering_z_1 = layering.Layering(z_dimension_idx,
self.num_z_layers)
alpha = 8
self.blur_half_width = blur_half_width_voxels
#
# This notation is slightly confusing, but it is meant to be the
# direction you blur when you are on the layer corresponding to x-
# or y-layering. So, if you are layering in x, then you blur in y
# and vice versa.
#
max_blur_x_2 = square_blur.SquareBlur(alpha,
[0, self.blur_half_width, 0])
max_blur_y_2 = square_blur.SquareBlur(alpha,
[self.blur_half_width, 0, 0])
self.max_blur_xy_2 = [max_blur_x_2, max_blur_y_2]
single_layer = 1
layering_x_3 = layering.Layering(x_dimension_idx, single_layer)
layering_y_3 = layering.Layering(y_dimension_idx, single_layer)
self.layering_xy_3 = [layering_x_3, layering_y_3]
scale_min = self.permittivity_bounds[0]
scale_max = self.permittivity_bounds[1]
self.scale_5 = scale.Scale([scale_min, scale_max])
# Initialize the filter chain
self.filters = [
self.sigmoid_0, self.layering_z_1, self.max_blur_xy_2,
self.layering_xy_3, self.sigmoid_4, self.scale_5
]
self.init_variables()
def init_filters_and_variables(self):
self.num_filters = 2
self.num_variables = 1 + self.num_filters
x_dimension_idx = 0
y_dimension_idx = 1
z_dimension_idx = 2
z_voxel_layers = self.size[2]
self.layering_z_0 = layering.Layering(z_dimension_idx,
self.num_z_layers, [0, 1],
self.spacer_height_voxels, 0.0)
# alpha = 8
# self.blur_half_width = blur_half_width_voxels
#
# This notation is slightly confusing, but it is meant to be the
# direction you blur when you are on the layer corresponding to x-
# or y-layering. So, if you are layering in x, then you blur in y
# and vice versa.
#
# self.max_blur_xy_1 = square_blur.SquareBlur(
# alpha,
# [self.blur_half_width, self.blur_half_width, 0])
scale_min = self.permittivity_bounds[0]
scale_max = self.permittivity_bounds[1]
self.scale_1 = scale.Scale([scale_min, scale_max])
# Initialize the filter chain
self.filters = [self.layering_z_0, self.scale_1]
self.init_variables()
def update_filters(self, epoch):
self.sigmoid_beta = 0.0625 * (2**epoch) / (2**3)
# self.sigmoid_beta = 0.0625
self.layering_y_0 = layering.Layering(self.y_dimension_idx,
self.num_y_layers)
self.sigmoid_1 = sigmoid.Sigmoid(self.sigmoid_beta, self.sigmoid_eta)
# self.sigmoid_3 = sigmoid.Sigmoid(self.sigmoid_beta, self.sigmoid_eta)
# self.filters = [self.layering_y_0, self.sigmoid_1, self.scale_2]#[self.layering_y_0, self.scale_1]# [self.sigmoid_0, self.layering_z_1, self.max_blur_xy_2, self.sigmoid_3, self.scale_4]
self.filters = [self.layering_y_0, self.sigmoid_1, self.scale_2]
def update_filters(self, epoch):
self.sigmoid_beta = 0.25 * (2**epoch)
z_voxel_layers = self.size[2]
self.layering_z_0 = layering.Layering(self.z_dimension_idx,
self.num_z_layers)
self.sigmoid_1 = sigmoid.Sigmoid(self.sigmoid_beta, self.sigmoid_eta)
# self.sigmoid_3 = sigmoid.Sigmoid(self.sigmoid_beta, self.sigmoid_eta)
# self.filters = [self.layering_z_0, self.sigmoid_1, self.scale_2]#[self.layering_z_0, self.scale_1]# [self.sigmoid_0, self.layering_z_1, self.max_blur_xy_2, self.sigmoid_3, self.scale_4]
self.filters = [self.scale_2]
def update_filters(self, epoch):
# This was 0.25 * (2**epoch) before we changed it back
# self.sigmoid_beta = 0.0625 * (2**epoch)
# z_voxel_layers = self.size[2]
self.layering_y_0 = layering.Layering(self.y_dimension_idx,
self.num_z_layers)
# self.sigmoid_1 = sigmoid.Sigmoid(self.sigmoid_beta, self.sigmoid_eta)
# self.sigmoid_3 = sigmoid.Sigmoid(self.sigmoid_beta, self.sigmoid_eta)
# self.filters = [self.layering_y_0, self.sigmoid_1, self.scale_2]#[self.layering_y_0, self.scale_1]# [self.sigmoid_0, self.layering_z_1, self.max_blur_xy_2, self.sigmoid_3, self.scale_4]
self.filters = [
self.layering_y_0, self.scale_1
] #[self.layering_y_0, self.scale_1]# [self.sigmoid_0, self.layering_z_1, self.max_blur_xy_2, self.sigmoid_3, self.scale_4]
def init_filters_and_variables(self):
self.num_filters = 6
self.num_variables = 1 + self.num_filters
# Start the sigmoids at weak strengths
self.sigmoid_beta = 0.0625
self.sigmoid_eta = 0.5
self.sigmoid_0 = sigmoid.Sigmoid(self.sigmoid_beta, self.sigmoid_eta)
self.sigmoid_2 = sigmoid.Sigmoid(self.sigmoid_beta, self.sigmoid_eta)
x_dimension_idx = 0
y_dimension_idx = 1
z_dimension_idx = 2
alpha = 8
# I truly dislike this silent parameter passing, like truly scarily bad coding
self.blur_half_width = max_blur_filter_half_width
# This notation is slightly confusing, but it is meant to be the
# direction you blur when you are on the layer corresponding to x-
# or y-layering. So, if you are layering in x, then you blur in y
# and vice versa.
self.max_blur_xy_1 = square_blur.SquareBlur(
alpha, [self.blur_half_width, self.blur_half_width, 0])
self.gaussian_blur_3 = GaussianBlur(gaussian_blur_filter_sigma)
z_voxel_layers = self.size[2]
self.layering_z_4 = layering.Layering(z_dimension_idx,
self.num_z_layers, [0, 1],
self.spacer_height_voxels, 0.0)
scale_min = self.permittivity_bounds[0]
scale_max = self.permittivity_bounds[1]
self.scale_5 = scale.Scale([scale_min, scale_max])
# Initialize the filter chain
self.filters = [
self.sigmoid_0, self.max_blur_xy_1, self.sigmoid_2,
self.gaussian_blur_3, self.layering_z_4, self.scale_5
]
self.init_variables()
def init_filters_and_variables(self):
self.num_filters = 3 #5
self.num_variables = 1 + self.num_filters
# z_voxel_layers = self.size[2]
self.layering_y_0 = layering.Layering(self.y_dimension_idx,
self.num_y_layers)
# Start the sigmoids at weak strengths
self.sigmoid_beta = 0.0625 / (2**3)
self.sigmoid_eta = 0.5
self.sigmoid_1 = sigmoid.Sigmoid(self.sigmoid_beta, self.sigmoid_eta)
# self.sigmoid_3 = sigmoid.Sigmoid(self.sigmoid_beta, self.sigmoid_eta)
# alpha = 8
# self.blur_half_width = blur_half_width_voxels
#
# This notation is slightly confusing, but it is meant to be the
# direction you blur when you are on the layer corresponding to x-
# or y-layering. So, if you are layering in x, then you blur in y
# and vice versa.
#
# self.max_blur_xy_2 = square_blur.SquareBlur(
# alpha,
# [self.blur_half_width, self.blur_half_width, 0])
scale_real_min = np.real(self.permittivity_bounds[0])
scale_real_max = np.real(self.permittivity_bounds[1])
scale_real_2 = scale.Scale([scale_real_min, scale_real_max])
scale_imag_min = np.imag(self.permittivity_bounds[0])
scale_imag_max = np.imag(self.permittivity_bounds[1])
scale_imag_2 = scale.Scale([scale_imag_min, scale_imag_max])
self.scale_2 = [scale_real_2, scale_imag_2]
# Initialize the filter chain
# self.filters = [self.layering_y_0, self.sigmoid_1, self.scale_2]#[self.layering_y_0, self.scale_1]# [self.sigmoid_0, self.layering_z_1, self.max_blur_xy_2, self.sigmoid_3, self.scale_4]
self.filters = [self.layering_y_0, self.sigmoid_1, self.scale_2]
# self.filters = [self.scale_1]
self.update_filters(0)
self.init_variables()
def init_filters_and_variables(self): self.num_filters = 2 self.num_variables = 1 + self.num_filters self.layering_y_0 = layering.Layering(self.y_dimension_idx, self.num_y_layers) scale_real_min = np.real( self.permittivity_bounds[0] ) scale_real_max = np.real( self.permittivity_bounds[1] ) scale_real_1 = scale.Scale([scale_real_min, scale_real_max]) scale_imag_min = np.imag( self.permittivity_bounds[0] ) scale_imag_max = np.imag( self.permittivity_bounds[1] ) scale_imag_1 = scale.Scale([scale_imag_min, scale_imag_max]) self.scale_1 = [ scale_real_1, scale_imag_1 ] self.update_filters( 0 ) self.init_variables()
def init_filters_and_variables(self): self.num_filters = 3 self.num_variables = 1 + self.num_filters # Start the sigmoids at weak strengths self.sigmoid_beta = 0.0625 self.sigmoid_eta = 0.5 self.sigmoid_1 = sigmoid.Sigmoid(self.sigmoid_beta, self.sigmoid_eta) x_dimension_idx = 0 y_dimension_idx = 1 z_dimension_idx = 2 z_voxel_layers = self.size[2] self.layering_z = layering.Layering( z_dimension_idx, self.num_z_layers, [ 0, 1 ], self.spacer_height_voxels, 0.0 ) scale_min = self.permittivity_bounds[0] scale_max = self.permittivity_bounds[1] self.scale_2 = scale.Scale([scale_min, scale_max]) self.init_variables()
def init_filters_and_variables(self):
self.num_filters = 5
self.num_variables = 1 + self.num_filters
# Start the sigmoids at weak strengths
self.sigmoid_beta = 0.0625
self.sigmoid_eta = 0.5
self.sigmoid_1 = sigmoid.Sigmoid(self.sigmoid_beta, self.sigmoid_eta)
self.sigmoid_3 = sigmoid.Sigmoid(self.sigmoid_beta, self.sigmoid_eta)
x_dimension_idx = 0
y_dimension_idx = 1
z_dimension_idx = 2
z_voxel_layers = self.size[2]
self.layering_z_0 = layering.Layering(z_dimension_idx,
self.num_z_layers)
alpha = 12
self.blur_half_width = blur_half_width_voxels
self.max_blur_xy_2 = generic_blur_2d.make_square_blur(
alpha, self.blur_half_width)
scale_min = self.permittivity_bounds[0]
scale_max = self.permittivity_bounds[1]
self.scale_4 = scale.Scale([scale_min, scale_max])
# Initialize the filter chain
self.filters = [
self.layering_z_0, self.sigmoid_1, self.max_blur_xy_2,
self.sigmoid_3, self.scale_4
]
self.init_variables()
self.update_permittivity()
def init_filters_and_variables(self):
self.num_filters = 3
self.num_variables = 1 + self.num_filters
self.layering_y_0 = layering.Layering(self.y_dimension_idx,
self.num_y_layers)
blur_alpha = 8.0
self.blur_horizontal_1 = generic_blur_2d.make_rectangular_blur(
blur_alpha, np.abs(self.dilate_size_voxels), 0)
scale_real_min = np.real(self.permittivity_bounds[0])
scale_real_max = np.real(self.permittivity_bounds[1])
scale_real_2 = scale.Scale([scale_real_min, scale_real_max])
scale_imag_min = np.imag(self.permittivity_bounds[0])
scale_imag_max = np.imag(self.permittivity_bounds[1])
scale_imag_2 = scale.Scale([scale_imag_min, scale_imag_max])
self.scale_2 = [scale_real_2, scale_imag_2]
self.update_filters(0)
self.init_variables()
