def test_bim(self):
bim = ps.PlinkBIMFile('test/plink_test/plink.bim')
print bim.IDList
assert bim.n == 8
correct = np.array(
['rs_0', 'rs_1', 'rs_2', 'rs_3', 'rs_4', 'rs_5', 'rs_6', 'rs_7'])
assert np.all(bim.IDList.values.reshape(8) == correct)
def test_bad_filename(self):
bim = ps.PlinkBIMFile('test/plink_test/plink.fam')
def setUp(self):
self.M = 8
self.N = 5
self.bim = ps.PlinkBIMFile('test/plink_test/plink.bim')
def test_bim(self):
bim = ps.PlinkBIMFile(os.path.join(DIR, 'plink_test/plink.bim'))
assert_equal(bim.n, 8)
correct = np.array(
['rs_0', 'rs_1', 'rs_2', 'rs_3', 'rs_4', 'rs_5', 'rs_6', 'rs_7'])
assert_array_equal(bim.IDList.values.reshape(8), correct)
def setUp(self):
self.M = 8
self.N = 5
self.bim = ps.PlinkBIMFile(
os.path.join(PLINK_TEST_FILES_DIR, 'plink.bim'))