def test_clin_sig(self):
"""
histology clinical significance
"""
self.assertTrue(LesionAnalysis.clin_sig(100, 8))
self.assertFalse(LesionAnalysis.clin_sig(100, 5))
self.assertFalse(LesionAnalysis.clin_sig(100, 6))
self.assertTrue(LesionAnalysis.clin_sig(700, 6))
def test_clin_sig(self):
"""
histology clinical significance
"""
self.assertTrue(LesionAnalysis.clin_sig(100, 8))
self.assertFalse(LesionAnalysis.clin_sig(100, 5))
self.assertFalse(LesionAnalysis.clin_sig(100, 6))
self.assertTrue(LesionAnalysis.clin_sig(700, 6))
def test_valid_dataset(self):
"""
valid dataset
"""
P13 = LesionAnalysis(13, './testing')
self.assertFalse(P13.valid)
P11 = LesionAnalysis(11, './testing')
self.assertTrue(P11.valid)
def test_check_benign_match(self):
"""
ARFI read : benign pathology
"""
P14 = LesionAnalysis(14, './testing')
self.assertTrue(P14.benign_match['bph'])
self.assertFalse(P14.benign_match['atrophy'])
P12 = LesionAnalysis(12, './testing')
self.assertFalse(P12.benign_match['bph'])
self.assertTrue(P12.benign_match['atrophy'])
def test_histology_arfi_index_match(self):
"""
histology / ARFI index match
"""
P11 = LesionAnalysis(11, './testing')
self.assertFalse(P11.index_match['exact'])
self.assertTrue(P11.index_match['nn'])
def test_arfi_lesion(self):
"""
ARFI lesion file parsing
"""
P11 = LesionAnalysis(11, './testing')
self.assertTrue(P11.arfi['index']['region'] == '11p')
self.assertTrue(P11.arfi['index']['IOS'] == 3)
# these tests depend on Prostate27, but I'll include them too
self.assertTrue(P11.arfi['index']['location'] == 'posterior')
self.assertTrue(P11.arfi['index']['zone'] == 'peripheral zone')
def test_histology_ECE(self):
"""
Histology JSON ECE parsing
"""
P10 = LesionAnalysis(10, './testing')
self.assertTrue(P10.histology['index']['Staging'] == 'T3a')
self.assertTrue(P10.histology['index']['ECE_extent'] == 'Established')
P10 = MRAnalysis(10, './testing')
self.assertTrue(P10.histology['index']['Staging'] == 'T3a')
self.assertTrue(P10.histology['index']['ECE_extent'] == 'Established')
P11 = MRAnalysis(11, './testing')
self.assertTrue(P11.histology['index']['Staging'] == 'T3b')
self.assertTrue(P11.histology['index']['ECE_extent'] == 'Established')
def test_no_index_match(self):
"""
no histology index lesion
"""
P13 = LesionAnalysis(13, './testing')
self.assertFalse(P13.check_index_match())
def test_no_arfi_lesion(self):
"""
no ARFI lesions read
"""
P10 = LesionAnalysis(10, './testing')
self.assertFalse('index' in P10.arfi)
def test_no_index_match(self):
"""
no histology index lesion
"""
P13 = LesionAnalysis(13, './testing')
self.assertFalse(P13.check_index_match())