def __init__(self, parent=None, signalManager=None):
OWRpy.__init__(self)
self.setRvariableNames(['heatsubset'])
self.plotOnConnect = 0
self.plotdata = ''
self.rowvChoice = None
self.inputs.addInput('id0', 'Expression Matrix', redRRMatrix, self.processMatrix)
#GUI
mainArea = widgetBox(self.controlArea,orientation='horizontal')
#mainArea.setMaximumWidth(300)
options = widgetBox(mainArea,orientation='vertical')
options.setMaximumWidth(175)
options.setMinimumWidth(175)
dendrogramsBox = groupBox(options, label='Calculate dendrogram ', orientation='vertical')
self.notice = widgetLabel(dendrogramsBox,label='The data set has > 1000 rows.\nClustering on rows will likely fail.')
self.notice.setHidden(True)
self.dendrogramOptions = checkBox(dendrogramsBox,
buttons = ['Rows', 'Columns'], setChecked=['Rows', 'Columns'], orientation='horizontal',
callback=self.dendrogramChanged)
functions = widgetBox(dendrogramsBox,orientation='vertical')
self.distOptions = lineEdit(functions,label='Distance Function:', text='dist', orientation='vertical')
self.hclustOptions = lineEdit(functions,label='Clustering Function:',text='hclust',
orientation='vertical')
#self.reorderOptions = lineEdit(functions,label='Reorder Function:', text='reorder.dendrogram')
self.scaleOptions = radioButtons(options,label='Scale', buttons=['row','column','none'],
setChecked='row',orientation='horizontal')
otherOptions = groupBox(options,label='Other Options')
self.narmOptions = checkBox(otherOptions, buttons = ['Remove NAs'], setChecked=['Remove NAs'])
# self.showDendroOptions = checkBox(otherOptions,buttons=['Show dendrogram '], setChecked=['Show dendrogram '])
self.colorTypeCombo = comboBox(otherOptions, label = 'Color Type:',
items = ['rainbow', 'heat.colors', 'terrain.colors', 'topo.colors', 'cm.colors'],callback=self.colorTypeChange)
self.startSaturation = spinBox(otherOptions, label = 'Starting Saturation', min = 0, max = 100)
self.endSaturation = spinBox(otherOptions, label = 'Ending Saturation', min = 0, max = 100)
self.endSaturation.setValue(30)
separator(otherOptions,height=10)
self.imageWidth = spinBox(otherOptions, label = 'Image Width', min = 1, max = 1000)
self.imageWidth.setValue(4)
self.imageHeight = spinBox(otherOptions, label = 'Image Height', min = 1, max = 1000)
self.imageHeight.setValue(4)
self.notice2 = widgetLabel(options,label='The input matrix is not numeric.')
self.notice2.setHidden(True)
self.buttonsBox = widgetBox(options,orientation='horizontal')
self.buttonsBox.layout().setAlignment(Qt.AlignRight)
self.plotOnConnect = checkBox(self.buttonsBox, buttons=['Plot on Connect'])
button(self.buttonsBox, label = "Plot", callback=self.makePlot)
def __init__(self, **kwargs):
settingsList = ['output_txt', 'parameters']
OWRpy.__init__(self, **kwargs)
self.functionParams = ''
self.widgetInputsName = []
self.widgetInputsClass = []
self.widgetInputsFunction = []
self.numberInputs = 0
self.numberOutputs = 0
self.fieldList = {}
self.functionInputs = {}
self.processOnConnect = 1
# GUI
# several tabs with different parameters such as loading in a function, setting parameters, setting inputs and outputs
tabs = tabWidget.tabWidget(self.controlArea)
functionTab = tabs.createTabPage(_("Function Info"), orientation = 'vertical')
codeTab = tabs.createTabPage(_("Code"))
box = widgetBox.widgetBox(functionTab, orientation = 'horizontal')
box.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Maximum)
self.infoa = widgetLabel.widgetLabel(box, '')
self.packageName = lineEdit.lineEdit(box, label = _('Package:'), orientation = 1)
button.button(box, 'Load Package', callback = self.loadRPackage)
self.functionName = lineEdit.lineEdit(box, label = _('Function Name:'), orientation = 1)
button.button(box, 'Parse Function', callback = self.parseFunction)
self.argsLineEdit = lineEdit.lineEdit(box, label = _('GUI Args'))
self.connect(self.argsLineEdit, SIGNAL('textChanged(QString)'), self.setArgsLineEdit)
box = widgetBox.widgetBox(functionTab)
box.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
self.inputArea = QTableWidget()
box.layout().addWidget(self.inputArea)
self.inputArea.setColumnCount(7)
box = widgetBox.widgetBox(functionTab, orientation = 'horizontal')
#self.inputArea.hide()
self.connect(self.inputArea, SIGNAL("itemClicked(QTableWidgetItem*)"), self.inputcellClicked)
self.functionAllowOutput = checkBox.checkBox(box, label = _('Allow Output'), buttons = [_('Allow Output')])
self.captureROutput = checkBox.checkBox(box, label = 'Show Output', buttons = [_('Show Output')])
#self.inputsCombobox = redRGUI.comboBox(box, label = 'Input Class:', items = self.getRvarClass_classes())
self.outputsCombobox = comboBox.comboBox(box, label = _('Output Class:'), items = self.getRvarClass_classes())
button.button(box, label = _('Accept Inputs'), callback = self.acceptInputs)
button.button(box, _('Generate Code'), callback = self.generateCode)
button.button(box, _('Launch Widget'), callback = self.launch)
self.codeArea = QTextEdit()
codeTab.layout().addWidget(self.codeArea)
def __init__(self, parent=None, signalManager=None):
OWRpy.__init__(self, wantGUIDialog = 1)
self.rowCount = 10
self.colCount = 10
self.maxRow = 0 # sets the most extreme row and cols
self.maxCol = 0
self.classes = None
self.savedData = None
self.setRvariableNames(['table', 'table_cm'])
self.inputs.addInput('Data Table', 'Data Table', redRRDataFrame, self.processDF)
self.outputs.addOutput('Data Table', 'Data Table', redRRDataFrame) # trace problem with outputs
#GUI.
box = groupBox(self.GUIDialog, label = "Options")
redRCommitButton(self.bottomAreaRight, 'Commit', self.commitTable)
self.rowHeaders = checkBox(box, label= 'Table Annotations', buttons=['Use Row Headers', 'Use Column Headers'])
#self.colHeaders = checkBox(box, label=None, buttons=['Use Column Headers'])
self.rowHeaders.setChecked(['Use Row Headers', 'Use Column Headers'])
#self.colHeaders.setChecked(['Use Column Headers'])
self.customClasses = button(box, 'Use Custom Column Classes', callback = self.setCustomClasses)
button(box, 'Clear Classes', callback = self.clearClasses)
self.columnDialog = QDialog()
self.columnDialog.setLayout(QVBoxLayout())
self.columnDialog.hide()
self.columnNameLineEdit = lineEdit(self.columnDialog, label = 'Column Name:')
button(self.columnDialog, 'Commit', callback = self.commitNewColumn)
#button(self.bottomAreaRight, "Add Column", callback = self.addColumn)
#button(self.bottomAreaRight, "Add Row", callback = self.addRow)
box = groupBox(self.controlArea, label = "Table",
sizePolicy = QSizePolicy(QSizePolicy.Preferred, QSizePolicy.Preferred))
#self.splitCanvas.addWidget(box)
#self.R(self.Rvariables['table'] + '<- matrix("",nrow=10,ncol=10)', wantType = 'NoConversion')
self.dataTable = table(box, label = 'Data Table', rows = 10, columns = 10)
# if self.dataTable.columnCount() < 1:
# self.dataTable.setColumnCount(1)
# self.dataTable.setHorizontalHeaderLabels(['Rownames'])
# if self.dataTable.rowCount() < 1:
# self.dataTable.setRowCount(1)
# self.dataTable.setHorizontalHeaderLabels(['Rownames'])
self.connect(self.dataTable, SIGNAL("cellClicked(int, int)"), self.cellClicked) # works OK
self.connect(self.dataTable, SIGNAL("cellChanged(int, int)"), self.itemChanged)
self.window = QDialog(self)
self.window.setLayout(QVBoxLayout())
self.classTable = table(self.window, label = 'Data Table', rows = self.maxCol, columns = 2)
self.resize(700,500)
self.move(300, 25)
def __init__(self,widget,label = _('Commit'), callback = None, processOnInput=None,processOnChange=None,
icon=None, orientation='horizontal', width = None, height = None, alignment=Qt.AlignRight, toggleButton = False,**kwargs):
kwargs.setdefault('includeInReports', False)
kwargs.setdefault('sizePolicy', QSizePolicy(QSizePolicy.Preferred, QSizePolicy.Preferred))
widgetState.__init__(self,widget,label,**kwargs)
icon = str(redREnviron.directoryNames['libraryDir']+'/base/icons/fork.png').replace('\\', '/')
box = widgetBox(self.controlArea,orientation=orientation,alignment=alignment,includeInReports=False)
box2 = widgetBox(box,orientation='vertical',margin=0,spacing=0)
if processOnChange is dict:
self.processOnChangeState = checkBox(box2, label=_('processOnChange'), displayLabel=False,
buttons = [processOnInput['name']],
toolTips = [processOnInput['toolTip']]
)
elif processOnChange == True:
self.processOnChangeState = checkBox(box2, label=_('processOnChange'), displayLabel=False,
buttons = [_('Process On Parameter Change')],
toolTips = [_('Try to process as soon as a parameter is changed.')]
)
if processOnInput is dict:
self.processOnInputState = checkBox(box2, label=_('processOnInput'), displayLabel=False,
buttons = [processOnInput['name']],
toolTips = [processOnInput['toolTip']]
)
elif processOnInput == True:
self.processOnInputState = checkBox(box2, label=_('processOnInput'), displayLabel=False,
buttons = [_('Process On Data Input')],
toolTips = [_('Try to process as soon as data is received by the widget. The current state of parameters will be applied.')]
)
button.__init__(self, widget = box, label = label, callback = callback,
icon = icon, width = width, height = 35,
toggleButton = toggleButton,**kwargs)
self.setIcon(QIcon(icon))
self.setIconSize(QSize(20, 20))
def __init__(self, parent=None, signalManager=None):
OWRpy.__init__(self)
self.setRvariableNames(["sort"])
self.data = {}
self.RFunctionParam_x = ''
self.inputs.addInput('id0', _('Data Tabel'), redRRDataFrame, self.processx)
self.outputs.addOutput('id0', _('Sorted Data Table'), redRRDataFrame)
self.standardTab = widgetBox(self.controlArea)
self.options = checkBox(self.standardTab,label=_('Options'),
buttons = [_("Decreasing"), _('NA Last')], orientation='horizontal')
# self.standardTab.layout().setAlignment(self.options,Qt.AlignLeft)
self.sortingColumn1 = comboBox(self.standardTab, label = _('First Column to Sort:'))
self.sortingColumn2 = comboBox(self.standardTab, label = _('Second Column to Sort:'))
self.sortingColumn3 = comboBox(self.standardTab, label = _('Third Column to Sort:'))
self.commit = redRCommitButton(self.bottomAreaRight, _("Commit"), callback = self.commitFunction,
processOnInput=True)
def createMenu(self, selectedCol):
'''
self.tm.createMenu(selectedCol, sortable = self.sortable, filterable = self.filterable
'''
#print selectedCol, pos
# print _('in createMenu'), self.criteriaList
if not self.sortable and not self.filterable: return
globalPos = QCursor.pos() #self.mapToGlobal(pos)
self.menu = QDialog(None,Qt.Popup)
self.menu.setLayout(QVBoxLayout())
if self.sortable:
box = widgetBox(self.menu,orientation='horizontal')
box.layout().setAlignment(Qt.AlignLeft)
button(box,label='A->Z',callback= lambda: self.sort(selectedCol,Qt.AscendingOrder))
widgetLabel(box,label=_('Ascending Sort'))
box = widgetBox(self.menu,orientation='horizontal')
box.layout().setAlignment(Qt.AlignLeft)
button(box,label='Z->A',callback= lambda: self.sort(selectedCol,Qt.DescendingOrder))
widgetLabel(box,label=_('Descending Sort'))
if not self.filterable:
self.menu.move(globalPos)
self.menu.show()
return
if self.sortable:
hr = QFrame(self.menu)
hr.setFrameStyle( QFrame.Sunken + QFrame.HLine );
hr.setFixedHeight( 12 );
self.menu.layout().addWidget(hr)
clearButton = button(self.menu,label=_('Clear Filter'),
callback=lambda col=selectedCol: self.createCriteriaList(col,self.menu,action='clear'))
self.menu.layout().setAlignment(clearButton,Qt.AlignHCenter)
clearButton.hide()
self.numericLabel = widgetLabel(self.menu,label=_('Enter a value for one of these critera:'))
self.numericLabel.hide()
self.stringLabel = widgetLabel(self.menu,label=_('Enter a value for one of these critera (case sensitive):'))
self.stringLabel.hide()
self.factorLabel = widgetLabel(self.menu,label=_('Select Levels:'))
self.factorLabel.hide()
if selectedCol in self.criteriaList.keys():
clearButton.show()
self.optionsBox = widgetBox(self.menu)
self.optionsBox.layout().setAlignment(Qt.AlignTop)
#### Logic if R variable ###
#if self.varType == 0:
colClass = self.R('class(%s[,%d])' % (self.Rdata,selectedCol),silent=True)
if colClass in ['factor','logical']:
self.factorLabel.show()
if selectedCol in self.criteriaList.keys():
checked = self.criteriaList[selectedCol]['value']
else:
checked = []
if colClass =='logical':
levels = ['TRUE','FALSE']
else:
levels = self.R('levels(%s[,%d])' % (self.Rdata,selectedCol),wantType='list', silent=True)
if len(levels) > 1:
levels.insert(0,_('Check All'))
scroll = scrollArea(self.optionsBox,spacing=1)
c = checkBox(scroll,label=_('Levels'),displayLabel=False, buttons=levels,setChecked = checked)
scroll.setWidget(c.controlArea)
QObject.connect(c.buttons, SIGNAL('buttonClicked (int)'), lambda val : self.factorCheckBox(val,self.optionsBox))
elif colClass in ['integer','numeric']:
self.numericLabel.show()
self.options = [_('Equals'), _('Does Not Equal'),_('Greater Than'),_('Greater Than Or Equal To'),
_('Less Than'), _('Less Than or Equal To'), 'Between\n(2 numbers comma\nseparated, inclusive)',
'Not Between\n(2 numbers comma\nseparated)']
for x in self.options:
if selectedCol in self.criteriaList and self.criteriaList[selectedCol]['method'] == _('Numeric ') + x:
e = lineEdit(self.optionsBox,label=x,text=self.criteriaList[selectedCol]['value'])
else:
e = lineEdit(self.optionsBox,label=x)
self.connect(e, SIGNAL("textEdited(QString)"),
lambda val, col=selectedCol,field=x : self.clearOthers(val,self.optionsBox,field))
elif colClass in ['character']:
self.stringLabel.show()
self.options = [_('Equals'), _('Does Not Equal'),_('Begins With'),_('Ends With'),
_('Contains'), _('Does Not Contain')]
for x in self.options:
if selectedCol in self.criteriaList and self.criteriaList[selectedCol]['method'] == _('String ') + x:
e = lineEdit(self.optionsBox,label=x,text=self.criteriaList[selectedCol]['value'])
else:
e = lineEdit(self.optionsBox,label=x)
self.connect(e, SIGNAL("textEdited(QString)"),
lambda val, col=selectedCol,field=x : self.clearOthers(val,self.optionsBox,field))
buttonBox = widgetBox(self.optionsBox,orientation='horizontal')
buttonBox.layout().setAlignment(Qt.AlignRight)
okButton = button(buttonBox,label=_('OK'),
callback=lambda col=selectedCol: self.createCriteriaList(col,self.optionsBox,action=_('OK')))
okButton.setDefault (True)
button(buttonBox,label=_('Cancel'),
callback=lambda col=selectedCol: self.createCriteriaList(col,self.optionsBox,action='cancel'))
self.menu.move(globalPos)
self.menu.show()
def __init__(self, parent,label=None, displayLabel=True,includeInReports=True, name = '', data = None):
## want to init a graphics view with a new graphics scene, the scene will be accessable through the widget.
widgetState.__init__(self,parent,label,includeInReports)
QGraphicsView.__init__(self, self.controlArea)
# if displayLabel:
# self.controlArea = groupBox(parent,label=label, orientation='vertical')
# else:
# self.controlArea = widgetBox(parent,orientation='vertical')
#self.controlArea = widgetBox(parent)
self.topArea = widgetBox(self.controlArea,
sizePolicy = QSizePolicy(QSizePolicy.Minimum,QSizePolicy.Maximum),includeInReports=False)
self.middleArea = widgetBox(self.controlArea)
self.bottomArea = widgetBox(self.controlArea,includeInReports=False)
self.middleArea.layout().addWidget(self) # place the widget into the parent widget
scene = QGraphicsScene()
self.setScene(scene)
self.parent = parent
self.data = data
self.widgetSelectionRect = None
self.mainItem = None
self.query = ''
self.function = 'plot'
self.layers = []
self.image = 'plot'+unicode(time.time()) # the base file name without an extension
self.imageFileName = ''
self.currentScale = 1
self.customPlotFunction = None
self.controlGroups = {}
self.tabs = {}
################################
#### Themes #####
################################
self.options = {
'device': {
'Rcall': 'Cairo',
'parameters': {
'type':{
'default':'svg',
'qtWidget': 'imageType'
}
,'dpi':{
'default':'75',
'qtWidget': 'dpi'
}
,'bg': {
'default':'#FFFFFF',
'color': '#FFFFFF',
'qtWidget':'bgColor'
}
,'height': {
'default':400,
'qtWidget': 'dheight'
}
,'width': {
'default':400,
'qtWidget': 'dwidth'
}
,'units': {
'default':'px',
'qtWidget': 'units'
}
}
}
,'main': {
'Rcall': 'plot',
'parameters': {
'col': {
'default':None,
'qtWidget':'colorSeries',
'series': '',
'seriesLen': 0,
'getFunction': self.getColorSeries,
'setFunction': self.setColorSeries,
}
,'lty': {
'default':None,
'qtWidget':'linesListBox',
'getFunction': self.getLineTypes,
'setFunction': self.setLineTypes,
}
,'lwd': {
'default':None,
'qtWidget':'lineWidth'
}
,'pch': {
'default':None,
'qtWidget':'pointListBox',
'getFunction': self.getLineTypes,
'setFunction': self.setLineTypes,
}
,'xlim': {
'default':None,
'qtWidget':['xstart','xend'],
'getFunction': self.getLimits,
'setFunction': self.setLimits,
}
,'ylim': {
'default':None,
'qtWidget':['ystart','yend'],
'getFunction': self.getLimits,
'setFunction': self.setLimits,
}
}
},
'title': {
'Rcall': 'title',
'parameters': {
'main': {
'default':"Title",
'qtWidget':'mainTitle'
}
,'xlab': {
'default':"XLab",
'qtWidget':'xLab'
}
,'ylab': {
'default':"YLab",
'qtWidget':'yLab'
}
,'col.main': {
'default':'#000000',
'qtWidget':'titleColor'
}
,'col.sub': {
'default':'#000000',
'qtWidget':'subColor'
}
,'col.lab': {
'default':'#000000',
'qtWidget':'labColor'
}
}
},
'par': {
'Rcall':'par',
'parameters': {
'cex.axis': {
'default':1,
'qtWidget':'axisFont'
}
,'cex.lab': {
'default':1,
'qtWidget':'labFont'
}
,'cex': {
'default':1,
'qtWidget':'plotFont'
}
,'cex.main': {
'default':1,
'qtWidget':'mainFont'
}
,'cex.sub': {
'default':1,
'qtWidget':'subFont'
}
,'col.axis': {
'default':'#000000',
'qtWidget':'axisColor'
}
# ,'family': {
# 'default':'serif',
# 'qtWidget':'fontCombo'
# }
}
}
}
# ,'fg' : None
# ,'legendNames' : None
# ,'legendLocation' : "'bottomleft'"
# }
self.optionWidgets = {}
self.colorList = ['#000000', '#ff0000', '#00ff00', '#0000ff']
################################
#### Setup Tabs #####
################################
self.graphicOptionsButton = button(self.topArea,label='Graphic Options',
toggleButton = True,callback=self.displayGraphicOptions)
self.graphicOptionsWidget = widgetBox(self.topArea)
self.tabWidget = tabWidget(self.graphicOptionsWidget)
self.tabWidget.setFixedHeight(180)
hbox = widgetBox(self.graphicOptionsWidget,orientation='horizontal',alignment= Qt.AlignLeft)
self.resizeCheck = checkBox(hbox,label='resize',displayLabel=False,buttons={'true':'Resize Image'},setChecked='true')
button(hbox,label='Update Graphic', alignment=Qt.AlignLeft, callback=self.updatePlot)
self.createTab('General')
self.createTab('Points/Lines')
self.createTab('Advanced')
################################
#### Advanced Tabs #####
################################
imageBox = self.createControlGroup('Advanced',label='Image Properties')
self.optionWidgets['extrasLineEdit'] = lineEdit(imageBox, label = 'Advanced plotting parameters',
orientation='horizontal',
toolTip = 'Add extra parameters to the main plot.\nPlease see documentation for more details about parameters.')
self.optionWidgets['onlyAdvanced'] = checkBox(imageBox,
buttons=['Only use the advanced options here'],
label='advancedOnly',displayLabel=False)
################################
#### First Tabs #####
################################
imageBox = self.createControlGroup('General',label='Image Properties')
# imageBox = groupBox(firstTab,label='Image Properties', orientation='vertical',
# sizePolicy = QSizePolicy(QSizePolicy.Maximum ,QSizePolicy.Minimum))
self.optionWidgets['imageType'] = comboBox(imageBox,label='Image Type',items=['svg','png'])
self.optionWidgets['imageType'].setSizePolicy(QSizePolicy.MinimumExpanding,QSizePolicy.Minimum)
hbox = widgetBox(imageBox,orientation='horizontal')
self.optionWidgets['dheight'] = spinBox(hbox, label = 'Height', min = 1, max = 5000, value = 400)
self.optionWidgets['dwidth'] = spinBox(hbox, label = 'Width', min = 1, max = 5000, value = 400)
hbox = widgetBox(imageBox,orientation='horizontal')
self.optionWidgets['units'] = comboBox(hbox,label='units',items=[('px','Pixel'),('in','Inches')])
self.optionWidgets['dpi'] = comboBox(hbox,label='DPI',items=['75','100','150','auto'],editable=True)
labelBox = self.createControlGroup('General',label='Labels')
self.optionWidgets['mainTitle'] = lineEdit(labelBox,label='Main Title')
self.optionWidgets['xLab'] = lineEdit(labelBox,label='X Axis Label')
self.optionWidgets['yLab'] = lineEdit(labelBox,label='Y Axis Label')
fontBox = self.createControlGroup('General',label='Sizes')
fontColumnBox = widgetBox(fontBox,orientation='horizontal')
fontColumn1 = widgetBox(fontColumnBox,orientation='vertical')
fontColumn2 = widgetBox(fontColumnBox,orientation='vertical')
#self.optionWidgets['fontCombo'] = comboBox(fontColumn1, items = ['serif', 'sans', 'mono'], label='Font Family')
self.optionWidgets['lineWidth'] = spinBox(fontColumn1,label='Point/Line Size',decimals=2,min=1,max=50)
self.optionWidgets['plotFont'] = spinBox(fontColumn1, label = 'Plot Text Size',decimals=2, min = 1, max = 50)
self.optionWidgets['axisFont'] = spinBox(fontColumn1, label = 'Axis Text Size',decimals=2, min = 1, max = 50)
self.optionWidgets['mainFont'] = spinBox(fontColumn2, label = 'Title Text Size',decimals=2, min = 1, max = 50)
self.optionWidgets['subFont'] = spinBox(fontColumn2, label = 'Subtitle Text Size',decimals=2, min = 1, max = 50)
self.optionWidgets['labFont'] = spinBox(fontColumn2, label = ' XY Label Text Size',decimals=2, min = 1, max = 50)
limitBox = self.createControlGroup('General',label='Limits')
col2Box = widgetBox(limitBox,orientation='horizontal')
column1 = widgetBox(col2Box,orientation='vertical')
column2 = widgetBox(col2Box,orientation='vertical')
self.optionWidgets['xstart'] = lineEdit(column1,label='X Start', width=40)
self.optionWidgets['xend'] = lineEdit(column2,label='X End', width=40)
self.optionWidgets['ystart'] = lineEdit(column1,label='Y Start', width=40)
self.optionWidgets['yend'] = lineEdit(column2,label='Y End', width=40)
################################
#### Second Tabs #####
################################
colorBox = self.createControlGroup('Points/Lines',label='Colors')
hbox = widgetBox(colorBox,orientation='horizontal')
self.optionWidgets['colorSeries'] = comboBox(hbox,label='Generate Colors Series',orientation='vertical',
items = ['select','rainbow','heat.colors','terrain.colors','topo.colors','cm.colors'])
self.optionWidgets['colorSeriesLen'] = spinBox(hbox,label='Length of Series',displayLabel=False, min=0, max=500)
hbox.layout().setAlignment(self.optionWidgets['colorSeriesLen'].controlArea, Qt.AlignBottom)
self.optionWidgets['bgColor'] = ColorIcon(colorBox,label='Background')
#self.optionWidgets['customColors'] = button(colorBox,label='Custom Plot Colors',callback=self.setPlotColors)
colorBox2 = self.createControlGroup('Points/Lines',label='More Colors')
# colorColumnBox = widgetBox(colorBox2,orientation='horizontal')
# colorColumn1 = widgetBox(colorColumnBox,orientation='vertical')
# colorColumn2 = widgetBox(colorColumnBox,orientation='vertical')
self.optionWidgets['titleColor'] = ColorIcon(colorBox2,label='Title')
self.optionWidgets['subColor'] = ColorIcon(colorBox2,label='Subtitle')
self.optionWidgets['labColor'] = ColorIcon(colorBox2,label='Subtitle')
self.optionWidgets['axisColor'] = ColorIcon(colorBox2,label='Axis')
lineBox = self.createControlGroup('Points/Lines',label='Lines')
self.optionWidgets['linesListBox'] = listBox(lineBox, label = 'Line types', displayLabel=False,
selectionMode = QAbstractItemView.ExtendedSelection,
items = [(1,'________'), (2,'- - - -'), (3,'........'), (4,'_._._._.'),
(5,'__ __ __'), (6,'__.__.__.')])
pointBox = self.createControlGroup('Points/Lines',label='Points')
items = []
for i in range(1,26):
items.append((i-1,QListWidgetItem(QIcon(os.path.join(redREnviron.directoryNames['picsDir'],
'R icon (%d).png' %i)),'')))
for i in range(32,128):
items.append((i-1,'%s' % (chr(i))))
self.optionWidgets['pointListBox'] = listBox(pointBox, label = 'Line types', displayLabel=False,
selectionMode = QAbstractItemView.ExtendedSelection, items = items)
self.setTheme(self.options)
################################
### right click menu #######
################################
self.menu = QMenu(self)
save = self.menu.addMenu('Save As')
save.addAction('Bitmap')
save.addAction('PDF')
save.addAction('Post Script')
save.addAction('JPEG')
self.menu.addAction('Copy')
self.menu.addAction('Fit In Window')
self.menu.addAction('Zoom Out')
self.menu.addAction('Zoom In')
self.menu.addAction('Undock')
self.menu.addAction('Redock')
self.dialog = QDialog()
self.dialog.setWindowTitle('Red-R Graphics View' + name)
self.dialog.setLayout(QHBoxLayout())
self.standardImageType = 'svg'
QObject.connect(self.dialog, SIGNAL('finished(int)'), self.dialogClosed)
def __init__(self, parent,label=None, displayLabel=True,includeInReports=True, name = '', data = None, prePlottingCallback = None):
## want to init a graphics view with a new graphics scene, the scene will be accessable through the widget.
graphicsView.__init__(self, parent, label = label, displayLabel = displayLabel, includeInReports = includeInReports,
name = name, data = data)
## __init__(self, parent,label=_('Graph'), displayLabel=True,includeInReports=True, name = '', data = None)
################################
#### Themes #####
################################
self.prePlottingCallback = prePlottingCallback
self.options = {
'device': {
'imageType':'svg',
'dpi':'75',
'bgColor':'#FFFFFF',
'dheight':400,
'dwidth':400,
'units':'px'},
'main':{
'col':None,
'lty':None,
'lwd':None,
'pch':None,},
'title':{
'main':'',
'xlab':'',
'ylab':'',
'col.main':'#000000',
'col.sub':'#000000',
'col.lab':'#000000'},
'par':{
'cex.axis':1,
'cex.lab':1,
'cex.main':1,
'cex.sub':1,
'cex':1,
'col.axis':'#000000'}
}
self.optionWidgets = {}
self.colorList = ['#000000', '#ff0000', '#00ff00', '#0000ff']
################################
#### Setup Tabs #####
################################
self.graphicOptionsButton = button(self.topArea,label='Graphic Options',
toggleButton = True,callback=self.displayGraphicOptions)
self.graphicOptionsWidget = widgetBox(self.topArea)
self.graphicOptions = tabWidget(self.graphicOptionsWidget)
self.graphicOptions.setFixedHeight(180)
hbox = widgetBox(self.graphicOptionsWidget,orientation='horizontal',alignment= Qt.AlignLeft)
self.resizeCheck = checkBox(hbox,label='resize',displayLabel=False,buttons={'true':'Resize Image'},setChecked='true')
self.monkey = checkBox(hbox, label='useopts', displayLabel = False, buttons={'true':'Use Custom Plot Options'}, callback = self.enablePlotOptions)
button(hbox,label='Update Graphic', alignment=Qt.AlignLeft, callback=self.plotMultiple)
self.labels = self.graphicOptions.createTabPage('Main')
self.points = self.graphicOptions.createTabPage('Points/Lines')
self.advanced = self.graphicOptions.createTabPage('Advanced')
#self.graphicOptions.hide()
firstTab = widgetBox(self.labels,orientation='horizontal',alignment=Qt.AlignLeft | Qt.AlignTop)
secondTab = widgetBox(self.points,orientation='horizontal',alignment=Qt.AlignLeft | Qt.AlignTop)
advancedTab = widgetBox(self.advanced,orientation='vertical',alignment=Qt.AlignLeft | Qt.AlignTop)
################################
#### Advanced Tabs #####
################################
self.optionWidgets['extrasLineEdit'] = lineEdit(advancedTab, label = 'Advanced plotting parameters',
toolTip = 'Add extra parameters to the main plot.\nPlease see documentation for more details about parameters.')
self.optionWidgets['onlyAdvanced'] = checkBox(advancedTab,
buttons=[(1, 'Only use the advanced options here')],
label='advancedOnly',displayLabel=False)
################################
#### First Tabs #####
################################
imageBox = groupBox(firstTab,label='Image Properties', orientation='vertical',
sizePolicy = QSizePolicy(QSizePolicy.Maximum ,QSizePolicy.Minimum))
self.optionWidgets['imageType'] = comboBox(imageBox,label='Image Type',items=['svg', 'cairo' ,'png'])
self.optionWidgets['imageType'].setSizePolicy(QSizePolicy.MinimumExpanding,QSizePolicy.Minimum)
hbox = widgetBox(imageBox,orientation='horizontal')
self.optionWidgets['dheight'] = spinBox(hbox, label = 'Height', min = 1, max = 5000, value = 400)
self.optionWidgets['dwidth'] = spinBox(hbox, label = 'Width', min = 1, max = 5000, value = 400)
hbox = widgetBox(imageBox,orientation='horizontal')
self.optionWidgets['units'] = comboBox(hbox,label='units',items=[('px','Pixel'),('in','Inches')])
self.optionWidgets['dpi'] = comboBox(hbox,label='DPI',items=['75','100','150','auto'],editable=True)
labelBox = groupBox(firstTab,label='Labels', orientation='vertical',
sizePolicy = QSizePolicy(QSizePolicy.Maximum ,QSizePolicy.Minimum))
self.optionWidgets['mainTitle'] = lineEdit(labelBox,label='Main Title')
self.optionWidgets['xLab'] = lineEdit(labelBox,label='X Axis Label')
self.optionWidgets['yLab'] = lineEdit(labelBox,label='Y Axis Label')
fontBox = groupBox(firstTab,label='Sizes', orientation='vertical',
sizePolicy = QSizePolicy(QSizePolicy.Maximum ,QSizePolicy.Minimum))
fontColumnBox = widgetBox(fontBox,orientation='horizontal')
fontColumn1 = widgetBox(fontColumnBox,orientation='vertical')
fontColumn2 = widgetBox(fontColumnBox,orientation='vertical')
#self.optionWidgets['fontCombo'] = comboBox(fontColumn1, items = ['serif', 'sans', 'mono'], label='Font Family')
self.optionWidgets['lineWidth'] = spinBox(fontColumn1,label='Point/Line Size',decimals=2,min=1,max=50)
self.optionWidgets['plotFont'] = spinBox(fontColumn1, label = 'Plot Text Size',decimals=2, min = 1, max = 50)
self.optionWidgets['axisFont'] = spinBox(fontColumn1, label = 'Axis Text Size',decimals=2, min = 1, max = 50)
self.optionWidgets['mainFont'] = spinBox(fontColumn2, label = 'Title Text Size',decimals=2, min = 1, max = 50)
self.optionWidgets['subFont'] = spinBox(fontColumn2, label = 'Subtitle Text Size',decimals=2, min = 1, max = 50)
self.optionWidgets['labFont'] = spinBox(fontColumn2, label = ' XY Label Text Size',decimals=2, min = 1, max = 50)
colorBox = groupBox(firstTab,label='Colors', orientation='vertical',
sizePolicy = QSizePolicy(QSizePolicy.Maximum ,QSizePolicy.Minimum))
hbox = widgetBox(colorBox,orientation='horizontal')
self.optionWidgets['colorSeries'] = comboBox(hbox,label='Generate Colors Series',orientation='vertical',
items = ['select','rainbow','heat.colors','terrain.colors','topo.colors','cm.colors'])
self.optionWidgets['colorSeriesLen'] = spinBox(hbox,label='Length of Series',displayLabel=False, min=0, max=500)
hbox.layout().setAlignment(self.optionWidgets['colorSeriesLen'].controlArea, Qt.AlignBottom)
self.optionWidgets['bgColor'] = ColorIcon(colorBox,label='Background')
#self.optionWidgets['customColors'] = button(colorBox,label='Custom Plot Colors',callback=self.setPlotColors)
################################
#### Second Tabs #####
################################
colorBox2 = groupBox(secondTab,label='Colors', orientation='vertical',
sizePolicy = QSizePolicy(QSizePolicy.Maximum ,QSizePolicy.Minimum))
# colorColumnBox = widgetBox(colorBox2,orientation='horizontal')
# colorColumn1 = widgetBox(colorColumnBox,orientation='vertical')
# colorColumn2 = widgetBox(colorColumnBox,orientation='vertical')
self.optionWidgets['titleColor'] = ColorIcon(colorBox2,label='Title')
self.optionWidgets['subColor'] = ColorIcon(colorBox2,label='Subtitle')
self.optionWidgets['labColor'] = ColorIcon(colorBox2,label='Subtitle')
self.optionWidgets['axisColor'] = ColorIcon(colorBox2,label='Axis')
lineBox = groupBox(secondTab,label='Lines', orientation='vertical',
sizePolicy = QSizePolicy(QSizePolicy.Maximum ,QSizePolicy.Minimum))
self.optionWidgets['linesListBox'] = listBox(lineBox, label = 'Line types', displayLabel=False,
selectionMode = QAbstractItemView.ExtendedSelection,
items = [(1,'________'), (2,'- - - -'), (3,'........'), (4,'_._._._.'),
(5,'__ __ __'), (6,'__.__.__.')])
pointBox = groupBox(secondTab,label='Points', orientation='vertical',
sizePolicy = QSizePolicy(QSizePolicy.Maximum ,QSizePolicy.Minimum))
items = []
for i in range(1,26):
items.append((i-1,QListWidgetItem(QIcon(os.path.join(redREnviron.directoryNames['picsDir'],
'R icon (%d).png' %i)),'')))
for i in range(32,128):
items.append((i-1,'%s' % (chr(i))))
self.optionWidgets['pointListBox'] = listBox(pointBox, label = 'Line types', displayLabel=False,
selectionMode = QAbstractItemView.ExtendedSelection, items = items)
self.setTheme(self.options)
################################
### right click menu #######
################################
self.menu = QMenu(self)
save = self.menu.addMenu('Save As')
save.addAction('Bitmap')
save.addAction('PDF')
save.addAction('PDF (LATEX)')
save.addAction('Post Script')
save.addAction('JPEG')
if sys.platform == 'win32':
save.addAction('WMF')
self.menu.addAction('Copy')
self.menu.addAction('Fit In Window')
self.menu.addAction('Zoom Out')
self.menu.addAction('Zoom In')
#self.menu.addAction('Undock')
#self.menu.addAction('Redock')
self.dialog = QDialog()
self.dialog.setWindowTitle('Red-R Graphics View' + name)
self.dialog.setLayout(QHBoxLayout())
self.standardImageType = 'svg'
QObject.connect(self.dialog, SIGNAL('finished(int)'), self.dialogClosed)
self.graphicOptionsWidget.hide()
