def __init__(self, parent):
# Starting spectrometer
self.Spectrometer = ManagerSpectrometer()
self.SpectrometerProc = self.Spectrometer.start()
# Starting pulse shaper
self.PulseShaper = ManagerShaper()
self.PulseShaperProc = self.PulseShaper.start()
# Start sample switcher
self.SampleSwitcher = ManagerSampleSwitcher()
self.ManagerSampleSwitcherProc = self.SampleSwitcher.start()
# Create GUI
dw, dh = wx.DisplaySize()
wx.Frame.__init__(
self,
parent,
title=
"ODD for multiple fluoresce marker concentration measurements",
size=(0.9 * dw, 0.88 * dh))
self.ConstructGUI()
self.Center()
self.Maximize()
self.Show()
wx.EVT_CLOSE(self, self.on_close)
def __init__ (self, parent) : # Starting spectrometer self.Spectrometer = ManagerSpectrometer() self.SpectrometerProc = self.Spectrometer.start() # Starting pulse shaper self.PulseShaper = ManagerShaper() self.PulseShaperProc = self.PulseShaper.start() # Start sample switcher self.SampleSwitcher = ManagerSampleSwitcher() self.ManagerSampleSwitcherProc = self.SampleSwitcher.start() # Start filter wheel self.FilterWheel = ManagerFilterWheel() self.FilterWheelProc = self.FilterWheel.start() # Create GUI dw, dh = wx.DisplaySize() wx.Frame.__init__ (self, parent, title="ODD for multiple fluoresce marker concentration measurements", size=(0.9*dw, 0.88*dh) ) self.ConstructGUI () self.Center() self.Maximize() self.Show () wx.EVT_CLOSE (self, self.on_close)
def __init__(self, parent):
# Starting spectrometer
self.Spectrometer = ManagerSpectrometer()
self.SpectrometerProc = self.Spectrometer.start()
# Starting pulse shaper
self.PulseShaper = ManagerShaper()
self.PulseShaperProc = self.PulseShaper.start()
# Create GUI
dw, dh = wx.DisplaySize()
wx.Frame.__init__(
self,
parent,
title="Pulse shaper calibration with Ocean Optics Spectrometer",
size=(0.9 * dw, 0.88 * dh))
self.ConstructGUI()
self.Center()
self.Show()
wx.EVT_CLOSE(self, self.on_close)
class ODDExperiment(BasicWindow):
def __init__(self, parent):
# Starting spectrometer
self.Spectrometer = ManagerSpectrometer()
self.SpectrometerProc = self.Spectrometer.start()
# Starting pulse shaper
self.PulseShaper = ManagerShaper()
self.PulseShaperProc = self.PulseShaper.start()
# Start sample switcher
self.SampleSwitcher = ManagerSampleSwitcher()
self.ManagerSampleSwitcherProc = self.SampleSwitcher.start()
# Create GUI
dw, dh = wx.DisplaySize()
wx.Frame.__init__(
self,
parent,
title=
"ODD for multiple fluoresce marker concentration measurements",
size=(0.9 * dw, 0.88 * dh))
self.ConstructGUI()
self.Center()
self.Maximize()
self.Show()
wx.EVT_CLOSE(self, self.on_close)
def __del__(self):
# Close spectrometer
self.Spectrometer.exit()
self.SpectrometerProc.join()
# Close pulse shaper
self.PulseShaper.exit()
self.PulseShaperProc.join()
# Close sample switcher
self.SampleSwitcher.exit()
self.ManagerSampleSwitcherProc.join()
def ConstructGUI(self):
""" Build GUI """
self.panel = wx.Panel(self)
sizer = wx.GridBagSizer()
############################ Settings Notebook ############################
self.SettingsNotebook = SettingsNotebook(self.panel, self.Spectrometer,
self.SampleSwitcher,
self.PulseShaper)
sizer.Add(self.SettingsNotebook,
pos=(0, 0),
span=(1, 1),
flag=wx.EXPAND | wx.TOP | wx.LEFT | wx.RIGHT,
border=10)
############################ Command panel ############################
boxsizer = wx.BoxSizer(wx.VERTICAL)
# Interactively display spectrum
boxsizer.Add(self.CreateShowSpectrumButton(), flag=wx.EXPAND, border=5)
# Separator
boxsizer.Add(wx.StaticText(self.panel), flag=wx.EXPAND, border=5)
# Separator
boxsizer.Add(wx.StaticText(self.panel), flag=wx.EXPAND, border=5)
# Send random phase to the pulse shaper
boxsizer.Add(self.CreateRandomPhaseButton(), flag=wx.EXPAND, border=5)
# Send random amplitude to the pulse shaper
boxsizer.Add(self.CreateRandomAmplitudeButton(),
flag=wx.EXPAND,
border=5)
# Send zero amplitude and zero phase to the pulse shaper
boxsizer.Add(self.CreateZeroAmplitudeButton(),
flag=wx.EXPAND,
border=5)
# Open pulse shaper equalizer
boxsizer.Add(self.CreatePulseShaperEqualizerButton(),
flag=wx.EXPAND,
border=5)
# Separator
boxsizer.Add(wx.StaticText(self.panel), flag=wx.EXPAND, border=5)
# Save settings
boxsizer.Add(self.CreateSaveSettingsButton(), flag=wx.EXPAND, border=5)
# Load settings
boxsizer.Add(self.CreateLoadSettingsButton(), flag=wx.EXPAND, border=5)
sizer.Add(boxsizer,
pos=(1, 0),
span=(1, 1),
flag=wx.EXPAND | wx.TOP | wx.LEFT | wx.RIGHT | wx.GROW,
border=10)
########################### End of constructing panel ######################################
self.panel.SetSizer(sizer)
############################# Setting visvis #######################################
Figure = app.GetFigureClass()
self.fig = Figure(self)
boxsizer = wx.BoxSizer(wx.HORIZONTAL)
boxsizer.Add(self.panel, 0.5, wx.EXPAND)
boxsizer.Add(self.fig._widget, 2, wx.EXPAND)
#########################################################################################
self.SetSizer(boxsizer)
self.SetAutoLayout(True)
self.Layout()
class PerformAction(BasicWindow):
def __init__(self, parent):
# Starting spectrometer
self.Spectrometer = ManagerSpectrometer()
self.SpectrometerProc = self.Spectrometer.start()
# Starting pulse shaper
self.PulseShaper = ManagerShaper()
self.PulseShaperProc = self.PulseShaper.start()
# Create GUI
dw, dh = wx.DisplaySize()
wx.Frame.__init__(
self,
parent,
title="Pulse shaper calibration with Ocean Optics Spectrometer",
size=(0.9 * dw, 0.88 * dh))
self.ConstructGUI()
self.Center()
self.Show()
wx.EVT_CLOSE(self, self.on_close)
def __del__(self):
# Close spectrometer
self.Spectrometer.exit()
self.SpectrometerProc.join()
# Close pulse shaper
self.PulseShaper.exit()
self.PulseShaperProc.join()
def ConstructGUI(self):
""" Build GUI """
self.panel = wx.Panel(self)
sizer = wx.GridBagSizer()
############################ Settings Notebook ############################
self.SettingsNotebook = SettingsNotebook(self.panel, self.Spectrometer,
self.PulseShaper)
sizer.Add(self.SettingsNotebook,
pos=(0, 0),
span=(1, 1),
flag=wx.EXPAND | wx.TOP | wx.LEFT | wx.RIGHT,
border=10)
############################ Command panel ############################
boxsizer = wx.BoxSizer(wx.VERTICAL)
self.ActionButton = wx.Button(self.panel)
self.ActionButton.__start_label__ = "start action"
self.ActionButton.__stop_label__ = "STOP action"
self.ActionButton.SetLabel(self.ActionButton.__start_label__)
self.Bind(wx.EVT_BUTTON, self.SartAction, self.ActionButton)
boxsizer.Add(self.ActionButton, flag=wx.EXPAND, border=5)
# Separator
boxsizer.Add(wx.StaticText(self.panel), flag=wx.EXPAND, border=5)
# Interactively display spectrum
boxsizer.Add(self.CreateShowSpectrumButton(), flag=wx.EXPAND, border=5)
# Separator
boxsizer.Add(wx.StaticText(self.panel), flag=wx.EXPAND, border=5)
# Send random phase to the pulse shaper
boxsizer.Add(self.CreateRandomPhaseButton(), flag=wx.EXPAND, border=5)
# Send random amplitude to the pulse shaper
boxsizer.Add(self.CreateRandomAmplitudeButton(),
flag=wx.EXPAND,
border=5)
# Send zero amplitude and zero phase to the pulse shaper
boxsizer.Add(self.CreateZeroAmplitudeButton(),
flag=wx.EXPAND,
border=5)
# Open pulse shaper equalizer
boxsizer.Add(self.CreatePulseShaperEqualizerButton(),
flag=wx.EXPAND,
border=5)
# Separator
boxsizer.Add(wx.StaticText(self.panel), flag=wx.EXPAND, border=5)
# Save settings
boxsizer.Add(self.CreateSaveSettingsButton(), flag=wx.EXPAND, border=5)
# Load settings
boxsizer.Add(self.CreateLoadSettingsButton(), flag=wx.EXPAND, border=5)
sizer.Add(boxsizer,
pos=(1, 0),
span=(1, 1),
flag=wx.EXPAND | wx.TOP | wx.LEFT | wx.RIGHT | wx.GROW,
border=10)
########################### End of constructing panel ######################################
self.panel.SetSizer(sizer)
############################# Setting visvis #######################################
Figure = app.GetFigureClass()
self.fig = Figure(self)
boxsizer = wx.BoxSizer(wx.HORIZONTAL)
boxsizer.Add(self.panel, 0.5, wx.EXPAND)
boxsizer.Add(self.fig._widget, 2, wx.EXPAND)
#########################################################################################
self.SetSizer(boxsizer)
self.SetAutoLayout(True)
self.Layout()
def SartAction(self, event):
"""
<self.ActionButton> was clicked
"""
button = self.ActionButton
if button.GetLabel() == button.__start_label__:
self.StopAllJobs()
# get spectrometer's settings
settings = self.SettingsNotebook.Spectrometer.GetSettings()
# Initiate spectrometer
if self.Spectrometer.SetSettings(settings) == RETURN_FAIL: return
# Initiate pulse shaper
settings = self.SettingsNotebook.PulseShaper.GetSettings()
if self.PulseShaper.Initialize(settings) == RETURN_FAIL: return
# Get wavelengths
self.wavelengths = self.Spectrometer.GetWavelengths()
# Start doing some actiom
self._continue_action = True
wx.CallAfter(self.DoAction)
# Change button's label
button.SetLabel(button.__stop_label__)
elif button.GetLabel() == button.__stop_label__:
self._continue_action = False
button.SetLabel(button.__start_label__)
else:
raise ValueError("Label is not recognized")
def DoAction(self):
"""
This method is affiliated to the method <self.SartAction>
"""
####################################################
#
# Zak add you code here
# e.g., in what follows we just acquire spectra
#
####################################################
# If you want to apply some radom phase maske then uncomment the following:
#amplitude_mask = self.PulseShaper.GetZeroMask() + 1
#phase_mask = np.random.rand(max_amplitude_mask.size)
#self.PulseShaper.SetMasks(amplitude_mask, phase_mask)
# Getting spectrum
spectrum = self.Spectrometer.AcquiredData()
# Plot the spectra
visvis.gca().Clear()
visvis.plot(self.wavelengths, spectrum)
visvis.xlabel("wavelength (nm)")
visvis.ylabel("counts")
visvis.title("Spectrum from radom pulse shape")
self.fig.DrawNow()
# Going to the next iteration
if self._continue_action:
wx.CallAfter(self.DoAction)
class ODDExperiment (BasicWindow) : def __init__ (self, parent) : # Starting spectrometer self.Spectrometer = ManagerSpectrometer() self.SpectrometerProc = self.Spectrometer.start() # Starting pulse shaper self.PulseShaper = ManagerShaper() self.PulseShaperProc = self.PulseShaper.start() # Start sample switcher self.SampleSwitcher = ManagerSampleSwitcher() self.ManagerSampleSwitcherProc = self.SampleSwitcher.start() # Start filter wheel self.FilterWheel = ManagerFilterWheel() self.FilterWheelProc = self.FilterWheel.start() # Create GUI dw, dh = wx.DisplaySize() wx.Frame.__init__ (self, parent, title="ODD for multiple fluoresce marker concentration measurements", size=(0.9*dw, 0.88*dh) ) self.ConstructGUI () self.Center() self.Maximize() self.Show () wx.EVT_CLOSE (self, self.on_close) def __del__ (self) : # Close spectrometer self.Spectrometer.exit(); self.SpectrometerProc.join() # Close pulse shaper self.PulseShaper.exit(); self.PulseShaperProc.join() # Close sample switcher self.SampleSwitcher.exit(); self.ManagerSampleSwitcherProc.join() # Close filter wheel self.FilterWheel.exit(); self.FilterWheelProc.join() def ConstructGUI (self) : """ Build GUI """ self.panel = wx.Panel(self) sizer = wx.GridBagSizer () ############################ Settings Notebook ############################ self.SettingsNotebook = SettingsNotebook(self.panel, self.Spectrometer, self.SampleSwitcher, self.PulseShaper, self.FilterWheel) sizer.Add(self.SettingsNotebook, pos=(0, 0), span=(1, 1), flag=wx.EXPAND|wx.TOP|wx.LEFT|wx.RIGHT , border=10) ############################ Command panel ############################ boxsizer = wx.BoxSizer (wx.VERTICAL) # Interactively display spectrum boxsizer.Add (self.CreateShowSpectrumButton(), flag=wx.EXPAND, border=5) # Separator boxsizer.Add (wx.StaticText(self.panel), flag=wx.EXPAND, border=5) # Open pulse shaper equalizer boxsizer.Add (self.CreatePulseShaperEqualizerButton(), flag=wx.EXPAND, border=5) # Separator boxsizer.Add (wx.StaticText(self.panel), flag=wx.EXPAND, border=5) # Save settings boxsizer.Add( self.CreateSaveSettingsButton(), flag=wx.EXPAND, border=5) # Load settings boxsizer.Add( self.CreateLoadSettingsButton(), flag=wx.EXPAND, border=5) sizer.Add(boxsizer, pos=(1, 0), span=(1, 1), flag=wx.EXPAND|wx.TOP|wx.LEFT|wx.RIGHT|wx.GROW, border=10) ########################### End of constructing panel ###################################### self.panel.SetSizer (sizer) ############################# Setting visvis ####################################### Figure = app.GetFigureClass() self.fig = Figure(self) boxsizer = wx.BoxSizer (wx.HORIZONTAL) boxsizer.Add(self.panel, 0.5, wx.EXPAND) boxsizer.Add(self.fig._widget, 2, wx.EXPAND) ######################################################################################### self.SetSizer (boxsizer) self.SetAutoLayout(True) self.Layout()